akcorut / kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
https://github.com/akcorut/kGWASflow/wiki
MIT License
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How to read `results/kmers_count/<sample>/kmers_with_strand` table #37

Open VanOverbeeke opened 3 weeks ago

VanOverbeeke commented 3 weeks ago

Hi,

I'd like to do some custom k-mer presence analyses on a per-sample basis. I'd like to read the individual k-mer databases per sample (results/kmers_count/<sample>/kmers_with_strand), but the only files left are in a binary format and I haven't been able to decode them. I could learn from list_kmers_found_in_multiple_samples how to decode the tables, since that is what parses the tables in the workflow, but that executable is also a binary :')

Kind regards, Lennert