spades step permission denied

akcorut / kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

https://github.com/akcorut/kGWASflow/wiki

MIT License

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spades step permission denied #4

Closed Kxpark closed 1 year ago

Kxpark commented 1 year ago

I have been having trouble with this step.

this shutil.Error occurs each time here. I tried manually setting each file permissions with chomd 755. I was hoping maybe you knew of an easier way to fix this.

Thanks again for all the help!

akcorut commented 1 year ago

Hey @Kxpark,

I haven't experienced this issue before but my research showed that this might be due to an input/output error on your end.

This issue on spades's GitHub repo seems very similar to your problem: https://github.com/ablab/spades/issues/1002

Best, Kivanc

Kxpark commented 1 year ago

Howdy,

After trying to update packages and change my python to 3.11 to match the new spades of 3.15.5, I dropped the version of spades down to 3.15.4 and it is finally running. Thank you again for the responses and the help.