plot multiple bed files as bar plots below the matrix

[girdhar3]

I am trying to plot H3K27ac peaks, H3K4me3 peaks and TAD regions below the matrix
python HiCPlotter.py -f $file -chr chr22 -o Example -r 10000 -n Neuron_PFC -s 1800 -e 4000 -o Example -ptd 1 -pcd 3 -pcdf $TAD,$H3K4me3_peaks,$H3K27ac_peaks -pdb 1 -ptr 1

I am getting this error

Traceback (most recent call last): File "HiCPlotter.py", line 2171, in HiCplotter(**args) File "HiCPlotter.py", line 663, in HiCplotter matrix,nums,tricks=read_HiCdata(files[exp],fileHeader,fileFooter,cleanNANs,smoothNoise,window,tadRange,plotInsulation,plotTadDomains,randomBins) File "HiCPlotter.py", line 61, in read_HiCdata if plotInsulation or plotTadDomains and not randomBins: nums,tricks=insulation(matrix,ins_window,rel_window) File "HiCPlotter.py", line 503, in insulation if current[0] not in pBorders and current[0]+1 not in regions: pBorders.append(current[0]) IndexError: index 0 is out of bounds for axis 0 with size 0

[girdhar3]

when I do this

python HiCPlotter.py -f $file -chr chr22 -o Example -r 10000 -n Neuron_PFC -s 1800 -e 4000 -o Example -pcd 1 -pcdf $TAD $H3K4me3_peaks $H3K27ac_peaks

It gives Upps!! Please provide equal number of HiC matrix and custom domains

[akdemirlab]

Hi, If you'd like to plot your data as bar plots then you should use "--barPlots" python HiCPlotter.py -f $file -chr chr22 -o Example -r 10000 -n Neuron_PFC -s 1800 -e 4000 -o Example -ptd 1 -bl TAD,K4me3,K27Ac -b $TAD,$H3K4me3_peaks,$H3K27ac_peaks -pdb 1 -ptr 1