Hi,
Thanks a lot for giving us a wounder tool to analyse our Single cells.
Currently, I am working on Sc-RNAseq data, and I am trying to extract only Tumor samples out. My plan was to identify the Samples based on CNV in samples. But I am not able to achieve this with CaSpER . My question is, is there a way to use CaSpER for identifying only Cancer samples? secondly, can we use 'orig.ident'(sample names) instead of row names of the count matrix (cell.ids).
Thanks a lot.
AK
Hi, Thanks a lot for giving us a wounder tool to analyse our Single cells. Currently, I am working on Sc-RNAseq data, and I am trying to extract only Tumor samples out. My plan was to identify the Samples based on CNV in samples. But I am not able to achieve this with CaSpER . My question is, is there a way to use CaSpER for identifying only Cancer samples? secondly, can we use 'orig.ident'(sample names) instead of row names of the count matrix (cell.ids). Thanks a lot. AK