issue installing on osx (no conda)

[morenoh149]

When I first tried to install it complained that numpy was not available. After I installed it I get the following error

 pipenv install causality
Installing causality…
Looking in indexes: https://pypi.python.org/simple
Collecting causality
Collecting statsmodels (from causality)
  Using cached https://files.pythonhosted.org/packages/29/df/1f8233500d8bb90f16fd066560f3805197e568af611ca97eddd5fb81b012/statsmodels-0.9.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting pytz (from causality)
  Using cached https://files.pythonhosted.org/packages/30/4e/27c34b62430286c6d59177a0842ed90dc789ce5d1ed740887653b898779a/pytz-2018.5-py2.py3-none-any.whl
Collecting decorator (from causality)
  Using cached https://files.pythonhosted.org/packages/bc/bb/a24838832ba35baf52f32ab1a49b906b5f82fb7c76b2f6a7e35e140bac30/decorator-4.3.0-py2.py3-none-any.whl
Collecting networkx (from causality)
  Using cached https://files.pythonhosted.org/packages/11/42/f951cc6838a4dff6ce57211c4d7f8444809ccbe2134179950301e5c4c83c/networkx-2.1.zip
Requirement already satisfied: numpy in /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages (from causality) (1.14.5)
Collecting patsy (from causality)
  Using cached https://files.pythonhosted.org/packages/5d/eb/92c4b45ca47a2dd1339c958636e083b50ffadb5162a599a1cbbe92f89832/patsy-0.5.0-py2.py3-none-any.whl
Collecting six (from causality)
  Using cached https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl
Collecting pandas (from causality)
  Downloading https://files.pythonhosted.org/packages/d8/ba/d2c6578afca709e211ac1cd836a66a6a042f1a773a970be345d9d08be426/pandas-0.23.3-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (14.0MB)
Collecting pymc (from causality)
  Using cached https://files.pythonhosted.org/packages/0c/1c/2eb7016284e04ccf401fdcf11b817b160629cf8cf230240ceb348311ac2e/pymc-2.3.6.tar.gz
Collecting python-dateutil (from causality)
  Using cached https://files.pythonhosted.org/packages/cf/f5/af2b09c957ace60dcfac112b669c45c8c97e32f94aa8b56da4c6d1682825/python_dateutil-2.7.3-py2.py3-none-any.whl
Collecting scipy (from causality)
  Using cached https://files.pythonhosted.org/packages/a0/b6/70bf61c1badb5fea82d4c558e05e76c2dee5e77bb072fe465d7c7a87287d/scipy-1.1.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Building wheels for collected packages: networkx, pymc
  Running setup.py bdist_wheel for networkx: started
  Running setup.py bdist_wheel for networkx: finished with status 'done'
  Stored in directory: /Users/harrymoreno/Library/Caches/pip/wheels/44/c0/34/6f98693a554301bdb405f8d65d95bbcd3e50180cbfdd98a94e
  Running setup.py bdist_wheel for pymc: started
  Running setup.py bdist_wheel for pymc: finished with status 'error'
  Complete output from command /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-install-ooarg4tj/pymc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-wheel-8ejm2src --python-tag cp36:
  running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building extension "pymc.flib" sources
  f2py options: ['skip:ppnd7']
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c' to sources.
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc' to include_dirs.
    adding 'build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.f' to sources.
  building extension "pymc.LazyFunction" sources
  building extension "pymc.Container_values" sources
  building extension "pymc.gp.linalg_utils" sources
  f2py options: []
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/fortranobject.c' to sources.
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp' to include_dirs.
  building extension "pymc.gp.incomplete_chol" sources
  f2py options: []
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/fortranobject.c' to sources.
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp' to include_dirs.
  building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
  f2py options: []
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/fortranobject.c' to sources.
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs' to include_dirs.
    adding 'build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources.
  building extension "pymc.gp.cov_funs.distances" sources
  f2py options: []
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/fortranobject.c' to sources.
    adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs' to include_dirs.
  build_src: building npy-pkg config files
  running build_py
  creating build/lib.macosx-10.13-x86_64-3.6
  creating build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/StepMethods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/CircularStochastic.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/diagnostics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/threadpool.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/graph.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/Matplot.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/Container.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/Model.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/distributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/datatypes.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/NormalApproximation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/progressbar.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/PyMCObjects.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/six.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/Node.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/CommonDeterministics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/calc_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/ScipyDistributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  copying pymc/decorators.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/no_trace.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/txt.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/hdf5.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/sqlite.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/pickle.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/hdf5ea.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/ram.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  copying pymc/database/base.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/melanoma.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/disaster_model.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/weibull_fit_gof.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/zip.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/custom_step.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/observation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/cov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_database.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_cov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_container.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_missing.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_observation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_realization.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_convergence.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_AM.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_distributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_slice.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/objectmodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_graph.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_gradients.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  copying pymc/tests/test_interactive.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/step_methods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/Realization.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/gpplots.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/GPutils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/Covariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/Mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
  creating build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
  running build_ext
  customize UnixCCompiler
  customize UnixCCompiler using build_ext
  get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
  customize Gnu95FCompiler
  Found executable /usr/local/bin/gfortran
  customize Gnu95FCompiler
  customize Gnu95FCompiler using build_ext
  building 'pymc.flib' extension
  compiling C sources
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers

  creating build/temp.macosx-10.13-x86_64-3.6/cephes
  creating build/temp.macosx-10.13-x86_64-3.6/build
  creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6
  creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc
  creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build
  creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6
  creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc
  compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc -I/Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c'
  extra options: '-msse3'
  clang: cephes/i0.c
  cephes/i0.c:372:30: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
          return( exp(x) * chbevl( y, A, 30 ) );
                                      ^
  cephes/i0.c:355:40: note: passing argument to parameter here
  extern double chbevl ( double, double *, int );
                                         ^
  cephes/i0.c:375:41: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
  return(  exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
                                          ^
  cephes/i0.c:355:40: note: passing argument to parameter here
  extern double chbevl ( double, double *, int );
                                         ^
  cephes/i0.c:392:21: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
          return( chbevl( y, A, 30 ) );
                             ^
  cephes/i0.c:355:40: note: passing argument to parameter here
  extern double chbevl ( double, double *, int );
                                         ^
  cephes/i0.c:395:32: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
  return(  chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
                                 ^
  cephes/i0.c:355:40: note: passing argument to parameter here
  extern double chbevl ( double, double *, int );
                                         ^
  4 warnings generated.
  clang: cephes/c2f.c
  cephes/c2f.c:8:11: warning: this old-style function definition is not preceded by a prototype [-Wstrict-prototypes]
  double i0_(x)
            ^
  1 warning generated.
  clang: cephes/chbevl.c
  clang: build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c
  In file included from build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16:
  In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.h:13:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
  /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
  #warning "Using deprecated NumPy API, disable it by " \
   ^
  build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16773:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds]
    d = shape(x,2);
        ^       ~
  build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:84:24: note: expanded from macro 'shape'
  #define shape(var,dim) var ## _Dims[dim]
                         ^            ~~~
  <scratch space>:231:1: note: expanded from here
  x_Dims
  ^
  build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16716:3: note: array 'x_Dims' declared here
    npy_intp x_Dims[2] = {-1, -1};
    ^
  build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:179:12: warning: unused function 'f2py_size' [-Wunused-function]
  static int f2py_size(PyArrayObject* var, ...)
             ^
  3 warnings generated.
  clang: build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c
  In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c:2:
  In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.h:13:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
  In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
  /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
  #warning "Using deprecated NumPy API, disable it by " \
   ^
  build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c:138:18: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'unsigned long' [-Wsign-compare]
          if (size < sizeof(notalloc)) {
              ~~~~ ^ ~~~~~~~~~~~~~~~~
  2 warnings generated.
  compiling Fortran sources
  Fortran f77 compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
  Fortran f90 compiler: /usr/local/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
  Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
  creating build/temp.macosx-10.13-x86_64-3.6/pymc
  compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc -I/Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c'
  gfortran:f77: pymc/flib.f
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  pymc/flib.f:316:55:

         DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like
                                                         1
  Warning: Unused variable 'd_now' declared at (1) [-Wunused-variable]
  pymc/flib.f:314:42:

         INTEGER i, nx, nalph, nmu, ntau, tnx
                                            1
  Warning: Unused variable 'tnx' declared at (1) [-Wunused-variable]
  pymc/flib.f:442:71:

         subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                                                         1
  Warning: Unused dummy argument 'gradxlike' at (1) [-Wunused-dummy-argument]
  pymc/flib.f:461:40:

           DOUBLE PRECISION like, low, high
                                          1
  Warning: Unused variable 'high' declared at (1) [-Wunused-variable]
  pymc/flib.f:458:36:

           INTEGER n, nlower, nupper, i
                                      1
  Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
  pymc/flib.f:461:29:

           DOUBLE PRECISION like, low, high
                               1
  Warning: Unused variable 'like' declared at (1) [-Wunused-variable]
  pymc/flib.f:461:34:

           DOUBLE PRECISION like, low, high
                                    1
  Warning: Unused variable 'low' declared at (1) [-Wunused-variable]
  pymc/flib.f:442:39:

         subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                         1
  Warning: Unused dummy argument 'lower' at (1) [-Wunused-dummy-argument]
  pymc/flib.f:442:45:

         subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                               1
  Warning: Unused dummy argument 'upper' at (1) [-Wunused-dummy-argument]
  pymc/flib.f:442:33:

         subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                   1
  Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument]
  pymc/flib.f:692:41:

         DOUBLE PRECISION aa, cc, sigma, pdf
                                           1
  Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:760:41:

         DOUBLE PRECISION aa, cc, sigma, pdf
                                           1
  Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:834:41:

         DOUBLE PRECISION aa, cc, sigma, pdf
                                           1
  Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:906:41:

         DOUBLE PRECISION aa, cc, sigma, pdf
                                           1
  Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:976:41:

         DOUBLE PRECISION aa, cc, sigma, pdf
                                           1
  Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:1186:29:

         DOUBLE PRECISION factln
                               1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:1185:51:

         DOUBLE PRECISION sumx, mut, infinity, sumfact
                                                     1
  Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
  pymc/flib.f:1185:27:

         DOUBLE PRECISION sumx, mut, infinity, sumfact
                             1
  Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
  pymc/flib.f:1300:55:

         DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf
                                                         1
  Warning: Unused variable 'cdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:1302:29:

         DOUBLE PRECISION factln, gammq
                               1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:1302:36:

         DOUBLE PRECISION factln, gammq
                                      1
  Warning: Unused variable 'gammq' declared at (1) [-Wunused-variable]
  pymc/flib.f:1301:59:

         DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                                                             1
  Warning: Unused variable 'sumcdf' declared at (1) [-Wunused-variable]
  pymc/flib.f:1301:51:

         DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                                                     1
  Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
  pymc/flib.f:1301:27:

         DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                             1
  Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
  pymc/flib.f:1402:29:

         DOUBLE PRECISION gammln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:2154:40:

         DOUBLE PRECISION gradlike(n), grad
                                          1
  Warning: Unused variable 'grad' declared at (1) [-Wunused-variable]
  pymc/flib.f:2665:29:

         DOUBLE PRECISION gammln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:2728:29:

         DOUBLE PRECISION gammln, psi
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:2793:29:

         DOUBLE PRECISION gammln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:2903:29:

         DOUBLE PRECISION gammln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:2959:29:

         DOUBLE PRECISION gammln, psi
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3021:29:

         DOUBLE PRECISION gammln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3396:58:

         DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike
                                                            1
  Warning: Unused variable 'glike' declared at (1) [-Wunused-variable]
  pymc/flib.f:3646:37:

         DOUBLE PRECISION gammln, factln
                                       1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3646:29:

         DOUBLE PRECISION gammln, factln
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3706:37:

         DOUBLE PRECISION gammln, factln, psi
                                       1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3706:29:

         DOUBLE PRECISION gammln, factln, psi
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:3836:29:

         DOUBLE PRECISION factln
                               1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:4039:26:

         DOUBLE PRECISION psi
                            1
  Warning: Unused variable 'psi' declared at (1) [-Wunused-variable]
  pymc/flib.f:4266:29:

         DOUBLE PRECISION gammln, psi
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:4332:29:

         DOUBLE PRECISION gammln, psi
                               1
  Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
  pymc/flib.f:5184:35:

         DOUBLE PRECISION like, factln, infinity, sump
                                     1
  Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
  pymc/flib.f:5186:23:

         INTEGER i,j,n_tmp
                         1
  Warning: Unused variable 'n_tmp' declared at (1) [-Wunused-variable]
  pymc/flib.f:5434:26:

         DOUBLE PRECISION tmp
                            1
  Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
  pymc/flib.f:5488:25:

         DOUBLE PRECISION i0
                           1
  Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
  pymc/flib.f:5481:26:

         DOUBLE PRECISION tmp
                            1
  Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
  pymc/flib.f:5535:25:

         DOUBLE PRECISION i0
                           1
  Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
  pymc/flib.f:5528:26:

         DOUBLE PRECISION tmp
                            1
  Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
  pymc/flib.f:4882:0:

               K   = I

  Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
  pymc/flib.f:4882:0: Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
  gfortran:f77: pymc/histogram.f
  gfortran:f77: pymc/flib_blas.f
  pymc/flib_blas.f:202:25:

         DOUBLE PRECISION PI
                           1
  Warning: Unused variable 'pi' declared at (1) [-Wunused-variable]
  gfortran:f77: pymc/blas_wrap.f
  gfortran:f77: pymc/math.f
  pymc/math.f:396:6:

         DOUBLE PRECISION FUNCTION DERF(X)
        1
  Warning: 'derf' declared at (1) is also the name of an intrinsic.  It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
  pymc/math.f:417:6:

         DOUBLE PRECISION FUNCTION DERFC(X)
        1
  Warning: 'derfc' declared at (1) is also the name of an intrinsic.  It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
  gfortran:f77: pymc/gibbsit.f
  pymc/gibbsit.f:2160:5:

     215 IF (R .GT. .5898437) GO TO 220
       1
  Warning: Label 215 at (1) defined but not used [-Wunused-label]
  pymc/gibbsit.f:2077:5:

     115 IF (R .GT. .5898437) GO TO 120
       1
  Warning: Label 115 at (1) defined but not used [-Wunused-label]
  pymc/gibbsit.f:2064:5:

      15 IF (KFLAG.GE.1) GO TO 30
       1
  Warning: Label 15 at (1) defined but not used [-Wunused-label]
  pymc/gibbsit.f:1204:16:

           cutpt = empquant(original,iteracnt,qhat,work)
                  1
  Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) [-Wargument-mismatch]
  gfortran:f77: build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.f
  /usr/local/bin/gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.13-x86_64-3.6/cephes/i0.o build/temp.macosx-10.13-x86_64-3.6/cephes/c2f.o build/temp.macosx-10.13-x86_64-3.6/cephes/chbevl.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib.o build/temp.macosx-10.13-x86_64-3.6/pymc/histogram.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib_blas.o build/temp.macosx-10.13-x86_64-3.6/pymc/blas_wrap.o build/temp.macosx-10.13-x86_64-3.6/pymc/math.o build/temp.macosx-10.13-x86_64-3.6/pymc/gibbsit.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0 -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -lgfortran -o build/lib.macosx-10.13-x86_64-3.6/pymc/flib.cpython-36m-darwin.so -Wl,-framework -Wl,Accelerate
  ld: framework not found Accelerate
  collect2: error: ld returned 1 exit status
  ld: framework not found Accelerate
  collect2: error: ld returned 1 exit status
  error: Command "/usr/local/bin/gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.13-x86_64-3.6/cephes/i0.o build/temp.macosx-10.13-x86_64-3.6/cephes/c2f.o build/temp.macosx-10.13-x86_64-3.6/cephes/chbevl.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib.o build/temp.macosx-10.13-x86_64-3.6/pymc/histogram.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib_blas.o build/temp.macosx-10.13-x86_64-3.6/pymc/blas_wrap.o build/temp.macosx-10.13-x86_64-3.6/pymc/math.o build/temp.macosx-10.13-x86_64-3.6/pymc/gibbsit.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0 -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -lgfortran -o build/lib.macosx-10.13-x86_64-3.6/pymc/flib.cpython-36m-darwin.so -Wl,-framework -Wl,Accelerate" failed with exit status 1

  ----------------------------------------
  Running setup.py clean for pymc
Successfully built networkx
Failed to build pymc
Installing collected packages: pytz, six, python-dateutil, pandas, patsy, statsmodels, decorator, networkx, pymc, scipy, causality
  Running setup.py install for pymc: started
    Running setup.py install for pymc: finished with status 'error'
    Complete output from command /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-install-ooarg4tj/pymc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-record-gqvxbuoq/install-record.txt --single-version-externally-managed --compile --install-headers /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/bin/../include/site/python3.6/pymc:
    running install
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building extension "pymc.flib" sources
    f2py options: ['skip:ppnd7']
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c' to sources.
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc' to include_dirs.
      adding 'build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.f' to sources.
    building extension "pymc.LazyFunction" sources
    building extension "pymc.Container_values" sources
    building extension "pymc.gp.linalg_utils" sources
    f2py options: []
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/fortranobject.c' to sources.
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp' to include_dirs.
    building extension "pymc.gp.incomplete_chol" sources
    f2py options: []
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/fortranobject.c' to sources.
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp' to include_dirs.
    building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
    f2py options: []
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/fortranobject.c' to sources.
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs' to include_dirs.
      adding 'build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources.
    building extension "pymc.gp.cov_funs.distances" sources
    f2py options: []
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs/fortranobject.c' to sources.
      adding 'build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs' to include_dirs.
    build_src: building npy-pkg config files
    running build_py
    creating build/lib.macosx-10.13-x86_64-3.6
    creating build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/StepMethods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/CircularStochastic.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/diagnostics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/threadpool.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/graph.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/Matplot.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/Container.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/Model.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/distributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/datatypes.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/NormalApproximation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/progressbar.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/PyMCObjects.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/six.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/Node.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/CommonDeterministics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/calc_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/ScipyDistributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    copying pymc/decorators.py -> build/lib.macosx-10.13-x86_64-3.6/pymc
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/no_trace.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/txt.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/hdf5.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/sqlite.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/pickle.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/hdf5ea.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/ram.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    copying pymc/database/base.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/database
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/melanoma.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/disaster_model.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/weibull_fit_gof.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/zip.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/custom_step.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/observation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/cov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/examples/gp
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_database.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_cov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_container.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_missing.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_observation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_realization.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_convergence.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_AM.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_distributions.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_slice.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/objectmodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_graph.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_gradients.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    copying pymc/tests/test_interactive.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/tests
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/step_methods.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/Realization.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/gpplots.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/GPutils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/Covariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/Mean.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp
    creating build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.13-x86_64-3.6/pymc/gp/cov_funs
    running build_ext
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
    customize Gnu95FCompiler
    Found executable /usr/local/bin/gfortran
    customize Gnu95FCompiler
    customize Gnu95FCompiler using build_ext
    building 'pymc.flib' extension
    compiling C sources
    C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers

    creating build/temp.macosx-10.13-x86_64-3.6/cephes
    creating build/temp.macosx-10.13-x86_64-3.6/build
    creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6
    creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc
    creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build
    creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6
    creating build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc
    compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc -I/Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c'
    extra options: '-msse3'
    clang: cephes/i0.c
    cephes/i0.c:372:30: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
            return( exp(x) * chbevl( y, A, 30 ) );
                                        ^
    cephes/i0.c:355:40: note: passing argument to parameter here
    extern double chbevl ( double, double *, int );
                                           ^
    cephes/i0.c:375:41: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
    return(  exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
                                            ^
    cephes/i0.c:355:40: note: passing argument to parameter here
    extern double chbevl ( double, double *, int );
                                           ^
    cephes/i0.c:392:21: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
            return( chbevl( y, A, 30 ) );
                               ^
    cephes/i0.c:355:40: note: passing argument to parameter here
    extern double chbevl ( double, double *, int );
                                           ^
    cephes/i0.c:395:32: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
    return(  chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
                                   ^
    cephes/i0.c:355:40: note: passing argument to parameter here
    extern double chbevl ( double, double *, int );
                                           ^
    4 warnings generated.
    clang: cephes/c2f.c
    cephes/c2f.c:8:11: warning: this old-style function definition is not preceded by a prototype [-Wstrict-prototypes]
    double i0_(x)
              ^
    1 warning generated.
    clang: cephes/chbevl.c
    clang: build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c
    In file included from build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16:
    In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.h:13:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
    /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    #warning "Using deprecated NumPy API, disable it by " \
     ^
    build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16773:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds]
      d = shape(x,2);
          ^       ~
    build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:84:24: note: expanded from macro 'shape'
    #define shape(var,dim) var ## _Dims[dim]
                           ^            ~~~
    <scratch space>:231:1: note: expanded from here
    x_Dims
    ^
    build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:16716:3: note: array 'x_Dims' declared here
      npy_intp x_Dims[2] = {-1, -1};
      ^
    build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.c:179:12: warning: unused function 'f2py_size' [-Wunused-function]
    static int f2py_size(PyArrayObject* var, ...)
               ^
    3 warnings generated.
    clang: build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c
    In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c:2:
    In file included from build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.h:13:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
    In file included from /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
    /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
    #warning "Using deprecated NumPy API, disable it by " \
     ^
    build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.c:138:18: warning: comparison of integers of different signs: 'Py_ssize_t' (aka 'long') and 'unsigned long' [-Wsign-compare]
            if (size < sizeof(notalloc)) {
                ~~~~ ^ ~~~~~~~~~~~~~~~~
    2 warnings generated.
    compiling Fortran sources
    Fortran f77 compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
    Fortran f90 compiler: /usr/local/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
    Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
    creating build/temp.macosx-10.13-x86_64-3.6/pymc
    compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc -I/Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/lib/python3.6/site-packages/numpy/core/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c'
    gfortran:f77: pymc/flib.f
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    f951: Warning: Nonconforming tab character in column 1 of line 4644 [-Wtabs]
    f951: Warning: Nonconforming tab character in column 1 of line 4645 [-Wtabs]
    f951: Warning: Nonconforming tab character in column 1 of line 4646 [-Wtabs]
    pymc/flib.f:316:55:

           DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like
                                                           1
    Warning: Unused variable 'd_now' declared at (1) [-Wunused-variable]
    pymc/flib.f:314:42:

           INTEGER i, nx, nalph, nmu, ntau, tnx
                                              1
    Warning: Unused variable 'tnx' declared at (1) [-Wunused-variable]
    pymc/flib.f:442:71:

           subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                                                           1
    Warning: Unused dummy argument 'gradxlike' at (1) [-Wunused-dummy-argument]
    pymc/flib.f:461:40:

             DOUBLE PRECISION like, low, high
                                            1
    Warning: Unused variable 'high' declared at (1) [-Wunused-variable]
    pymc/flib.f:458:36:

             INTEGER n, nlower, nupper, i
                                        1
    Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
    pymc/flib.f:461:29:

             DOUBLE PRECISION like, low, high
                                 1
    Warning: Unused variable 'like' declared at (1) [-Wunused-variable]
    pymc/flib.f:461:34:

             DOUBLE PRECISION like, low, high
                                      1
    Warning: Unused variable 'low' declared at (1) [-Wunused-variable]
    pymc/flib.f:442:39:

           subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                           1
    Warning: Unused dummy argument 'lower' at (1) [-Wunused-dummy-argument]
    pymc/flib.f:442:45:

           subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                                 1
    Warning: Unused dummy argument 'upper' at (1) [-Wunused-dummy-argument]
    pymc/flib.f:442:33:

           subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
                                     1
    Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument]
    pymc/flib.f:692:41:

           DOUBLE PRECISION aa, cc, sigma, pdf
                                             1
    Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:760:41:

           DOUBLE PRECISION aa, cc, sigma, pdf
                                             1
    Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:834:41:

           DOUBLE PRECISION aa, cc, sigma, pdf
                                             1
    Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:906:41:

           DOUBLE PRECISION aa, cc, sigma, pdf
                                             1
    Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:976:41:

           DOUBLE PRECISION aa, cc, sigma, pdf
                                             1
    Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:1186:29:

           DOUBLE PRECISION factln
                                 1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:1185:51:

           DOUBLE PRECISION sumx, mut, infinity, sumfact
                                                       1
    Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
    pymc/flib.f:1185:27:

           DOUBLE PRECISION sumx, mut, infinity, sumfact
                               1
    Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
    pymc/flib.f:1300:55:

           DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf
                                                           1
    Warning: Unused variable 'cdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:1302:29:

           DOUBLE PRECISION factln, gammq
                                 1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:1302:36:

           DOUBLE PRECISION factln, gammq
                                        1
    Warning: Unused variable 'gammq' declared at (1) [-Wunused-variable]
    pymc/flib.f:1301:59:

           DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                                                               1
    Warning: Unused variable 'sumcdf' declared at (1) [-Wunused-variable]
    pymc/flib.f:1301:51:

           DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                                                       1
    Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
    pymc/flib.f:1301:27:

           DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
                               1
    Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
    pymc/flib.f:1402:29:

           DOUBLE PRECISION gammln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:2154:40:

           DOUBLE PRECISION gradlike(n), grad
                                            1
    Warning: Unused variable 'grad' declared at (1) [-Wunused-variable]
    pymc/flib.f:2665:29:

           DOUBLE PRECISION gammln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:2728:29:

           DOUBLE PRECISION gammln, psi
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:2793:29:

           DOUBLE PRECISION gammln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:2903:29:

           DOUBLE PRECISION gammln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:2959:29:

           DOUBLE PRECISION gammln, psi
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3021:29:

           DOUBLE PRECISION gammln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3396:58:

           DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike
                                                              1
    Warning: Unused variable 'glike' declared at (1) [-Wunused-variable]
    pymc/flib.f:3646:37:

           DOUBLE PRECISION gammln, factln
                                         1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3646:29:

           DOUBLE PRECISION gammln, factln
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3706:37:

           DOUBLE PRECISION gammln, factln, psi
                                         1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3706:29:

           DOUBLE PRECISION gammln, factln, psi
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:3836:29:

           DOUBLE PRECISION factln
                                 1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:4039:26:

           DOUBLE PRECISION psi
                              1
    Warning: Unused variable 'psi' declared at (1) [-Wunused-variable]
    pymc/flib.f:4266:29:

           DOUBLE PRECISION gammln, psi
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:4332:29:

           DOUBLE PRECISION gammln, psi
                                 1
    Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
    pymc/flib.f:5184:35:

           DOUBLE PRECISION like, factln, infinity, sump
                                       1
    Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
    pymc/flib.f:5186:23:

           INTEGER i,j,n_tmp
                           1
    Warning: Unused variable 'n_tmp' declared at (1) [-Wunused-variable]
    pymc/flib.f:5434:26:

           DOUBLE PRECISION tmp
                              1
    Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
    pymc/flib.f:5488:25:

           DOUBLE PRECISION i0
                             1
    Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
    pymc/flib.f:5481:26:

           DOUBLE PRECISION tmp
                              1
    Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
    pymc/flib.f:5535:25:

           DOUBLE PRECISION i0
                             1
    Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
    pymc/flib.f:5528:26:

           DOUBLE PRECISION tmp
                              1
    Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
    pymc/flib.f:4882:0:

                 K   = I

    Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
    pymc/flib.f:4882:0: Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
    gfortran:f77: pymc/histogram.f
    gfortran:f77: pymc/flib_blas.f
    pymc/flib_blas.f:202:25:

           DOUBLE PRECISION PI
                             1
    Warning: Unused variable 'pi' declared at (1) [-Wunused-variable]
    gfortran:f77: pymc/blas_wrap.f
    gfortran:f77: pymc/math.f
    pymc/math.f:396:6:

           DOUBLE PRECISION FUNCTION DERF(X)
          1
    Warning: 'derf' declared at (1) is also the name of an intrinsic.  It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
    pymc/math.f:417:6:

           DOUBLE PRECISION FUNCTION DERFC(X)
          1
    Warning: 'derfc' declared at (1) is also the name of an intrinsic.  It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
    gfortran:f77: pymc/gibbsit.f
    pymc/gibbsit.f:2160:5:

       215 IF (R .GT. .5898437) GO TO 220
         1
    Warning: Label 215 at (1) defined but not used [-Wunused-label]
    pymc/gibbsit.f:2077:5:

       115 IF (R .GT. .5898437) GO TO 120
         1
    Warning: Label 115 at (1) defined but not used [-Wunused-label]
    pymc/gibbsit.f:2064:5:

        15 IF (KFLAG.GE.1) GO TO 30
         1
    Warning: Label 15 at (1) defined but not used [-Wunused-label]
    pymc/gibbsit.f:1204:16:

             cutpt = empquant(original,iteracnt,qhat,work)
                    1
    Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) [-Wargument-mismatch]
    gfortran:f77: build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.f
    /usr/local/bin/gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.13-x86_64-3.6/cephes/i0.o build/temp.macosx-10.13-x86_64-3.6/cephes/c2f.o build/temp.macosx-10.13-x86_64-3.6/cephes/chbevl.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib.o build/temp.macosx-10.13-x86_64-3.6/pymc/histogram.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib_blas.o build/temp.macosx-10.13-x86_64-3.6/pymc/blas_wrap.o build/temp.macosx-10.13-x86_64-3.6/pymc/math.o build/temp.macosx-10.13-x86_64-3.6/pymc/gibbsit.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0 -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -lgfortran -o build/lib.macosx-10.13-x86_64-3.6/pymc/flib.cpython-36m-darwin.so -Wl,-framework -Wl,Accelerate
    ld: framework not found Accelerate
    collect2: error: ld returned 1 exit status
    ld: framework not found Accelerate
    collect2: error: ld returned 1 exit status
    error: Command "/usr/local/bin/gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle build/temp.macosx-10.13-x86_64-3.6/cephes/i0.o build/temp.macosx-10.13-x86_64-3.6/cephes/c2f.o build/temp.macosx-10.13-x86_64-3.6/cephes/chbevl.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flibmodule.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/fortranobject.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib.o build/temp.macosx-10.13-x86_64-3.6/pymc/histogram.o build/temp.macosx-10.13-x86_64-3.6/pymc/flib_blas.o build/temp.macosx-10.13-x86_64-3.6/pymc/blas_wrap.o build/temp.macosx-10.13-x86_64-3.6/pymc/math.o build/temp.macosx-10.13-x86_64-3.6/pymc/gibbsit.o build/temp.macosx-10.13-x86_64-3.6/build/src.macosx-10.13-x86_64-3.6/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0 -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -L/usr/local/Cellar/gcc/7.1.0/lib/gcc/7/gcc/x86_64-apple-darwin16.7.0/7.1.0/../../.. -lgfortran -o build/lib.macosx-10.13-x86_64-3.6/pymc/flib.cpython-36m-darwin.so -Wl,-framework -Wl,Accelerate" failed with exit status 1

    ----------------------------------------

Error:  An error occurred while installing causality!
  Cache entry deserialization failed, entry ignored
  Cache entry deserialization failed, entry ignored
  Failed building wheel for pymc
Command "/Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-install-ooarg4tj/pymc/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-record-gqvxbuoq/install-record.txt --single-version-externally-managed --compile --install-headers /Users/harrymoreno/.local/share/virtualenvs/causality-yR51rIwE/bin/../include/site/python3.6/pymc" failed with error code 1 in /private/var/folders/6y/kf699bqj2sgcgjshb20fr5zh0000gn/T/pip-install-ooarg4tj/pymc/

[akelleh]

looks like an issue with the pymc dependency. I'll have to accelerate the upgrade to pymc3!

[akelleh]

removed the pymc dependency!