Cluster and merge alleles using pvclust

akikuno / DAJIN

One-step genotyping software using a long-read sequencer

https://doi.org/10.1371/journal.pbio.3001507

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Cluster and merge alleles using pvclust #14

Closed akikuno closed 3 years ago

akikuno commented 3 years ago

Currently, DAJIN uses a subjective threshold of cosine similarity to merge similar read group after HDBSCAN. pvclust may provide statistical threshold.

akikuno commented 3 years ago

I've tested but it does NOT work well in my problem setting.