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akikuno / DAJIN

One-step genotyping software using a long-read sequencer
https://doi.org/10.1371/journal.pbio.3001507
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Command line argument parse #36

Closed akikuno closed 2 years ago

akikuno commented 3 years ago

for example:

DAJIN.sh --design DAJIN/example/example.fa \
    --input_dir DAJIN/example/fastq \
    --control barcode01 \
    --genome mm10 \
    --grna CCTGTCCAGAGTGGGAGATAGCC,CCACTGCTAGCTGTGGGTAACCC \
    --output_dir DAJIN_example \
    --threads 10