Conda環境のセットアップをスクリプトにまとめる

[akikuno]

#!/bin/bash

CONDA_BASE=$(conda info --base)
source "${CONDA_BASE}/etc/profile.d/conda.sh"

if [ "$(conda info -e | grep -c DAJIN_nanosim)" -eq 0 ]; then
    conda config --add channels defaults
    conda config --add channels bioconda
    conda config --add channels conda-forge
    conda create -y -n DAJIN_nanosim python=3.6
    conda install -y -n DAJIN_nanosim --file ./DAJIN/utils/NanoSim/requirements.txt
    conda install -y -n DAJIN_nanosim minimap2
fi

if [ "$(conda info -e | grep -c DAJIN)" -eq 0 ]; then
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda create -y -n DAJIN python=3.6 \
  anaconda git nodejs \
  tensorflow tensorflow-gpu \
  samtools minimap2 \
  r-essentials r-base
fi