Update the threshold from 5 to 0.5 at identify_dissimilar_loci to capture 1% minor alleles. Commit Detail
Return smaller allele clustering labels (labels_previous) when the adjusted Rand index is sufficiently high to reduce predicted allele numbers.
Commit Detail
🔧 Maintenance
Add the detailed discription at identify_dissimilar_loci to clarify the purpose of the function. Commit Detail
Update a function name of utils.io.check_excel_or_csv to utils.io.determine_file_type for clarity. Commit Detail
Update examples: In tyr_c230gt_01, the point mutation of Tyr was previously 0.7%, but has been increased to 1.0% by adding point mutation reads from tyr_c230gt_50. Commit Detail
Rename validate_columns_of_batch_file in test_main.py. Commit Detail
💥 Breaking
Update the threshold from 5 to 0.5 at
identify_dissimilar_locito capture 1% minor alleles. Commit DetailReturn smaller allele clustering labels (
labels_previous) when the adjusted Rand index is sufficiently high to reduce predicted allele numbers. Commit Detail🔧 Maintenance
Add the detailed discription at
identify_dissimilar_locito clarify the purpose of the function. Commit DetailUpdate a function name of
utils.io.check_excel_or_csvtoutils.io.determine_file_typefor clarity. Commit DetailUpdate examples: In tyr_c230gt_01, the point mutation of Tyr was previously 0.7%, but has been increased to 1.0% by adding point mutation reads from tyr_c230gt_50. Commit Detail
Rename
validate_columns_of_batch_filein test_main.py. Commit DetailAdd tests of
strand_bias_handlerCommit DetailAdd type hints and comments in
return_labelsCommit Detail