Develop v0.5.1 - Githubissues

akikuno / DAJIN2

🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing

MIT License

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Develop v0.5.1 #41

Closed akikuno closed 2 weeks ago

akikuno commented 2 weeks ago

💥 Breaking

Enable to accept additional file formats as an input. Issue: #37
- FASTA [Commit Detail]
- BAM [Commit Detail]

📝 Documentation

Add a description of the procedure for accepting files generated by Dorado basecaller as input. Issue: #37 [Commit Detail]

🔧 Maintenance

Specify the Python version to be between 3.8 and 3.10. [Commit Detail]
Change mutation_exporter.report_mutations to return list[list[str]]. Update the tests accordingly. [Commit Detail]
Apply formatting with Ruff [Commit Detail]

🐛 Bug Fixes

Add reallocate_insertion_within_deletion into report.mutation_exporter and reflected it in the mutation info. [Commit Detail]