akikuno / DAJIN2

🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
MIT License
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Incorrect Insertion Allele Judgement for Matched Sequences within Large Deletions #42

Open akikuno opened 2 weeks ago

akikuno commented 2 weeks ago

📋 Description

In determining insertion alleles within large deletions, large deletions should be separated in regions with more than 10 bp matched regions.

image

Current Behavior

Sometimes it intuitively seems that the same sequence of reference is actually inserted.

In the current DAJIN2, if a large deletion is detected, any matched sequence within it is judged as an insertion allele.

Expected Behavior

No response

Steps To Reproduce

No response

🔍 Environment

- OS: WSL (Ubuntu 22.04)
- DAJIN2: 0.5.1

Anything else?

No response