Add `sr` presets to all execusions

akikuno / DAJIN2

🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing

MIT License

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Add `sr` presets to all execusions #55

Closed akikuno closed 1 month ago

akikuno commented 3 months ago

📋 Description

Currently, for mappy presets, we use map-ont and splice for reads longer than 500 bp, and sr, map-ont, and splice for reads shorter than that.

We are considering using sr, map-ont, and splice in all cases.

The reason for including sr is to accurately capture the mapping when reads are fragmented, such as in cases of large deletions or inversions.

Related: #31

🔍 Environment

- DAJIN2 version: 0.5.4

📎 Anything else?

No response

akikuno commented 1 month ago

Planned to be supported in v0.5.6

akikuno commented 1 month ago

Done. Merge at version 0.5.6 soon.