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akoyabio / phenoptrReports

Create analysis reports from inForm data.
https://akoyabio.github.io/phenoptrReports
zlib License
15 stars 7 forks source link

Unmixing quality report fails if path has '#' character #19

Open ccoltharp-Akoya opened 5 years ago

ccoltharp-Akoya commented 5 years ago

Unmixing quality report add-in failed when I had a # character in my path. Removing the # character in the path fixed the problem.

Console output when it failed: 

pandoc.exe: Could not fetch <my path name that has a # character>\Unmixing_quality_report_files/figure-html/density_plots-1.png
<my path truncated at the # character> : openBinaryFile: does not exist (No such file or directory)
Warning: Error in : pandoc document conversion failed with error 67
AB-Kent commented 5 years ago

Thanks, this seems to be an issue with pandoc (the document converter that creates the final report). See jgm/pandoc/issues/5664.

AB-Kent commented 5 years ago

No, not pandoc...