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akoyabio / phenoptrReports

Create analysis reports from inForm data.
https://akoyabio.github.io/phenoptrReports
zlib License
15 stars 7 forks source link

Analysis app : NAs introduced by coercion #34

Closed AB-Kent closed 4 years ago

AB-Kent commented 4 years ago

This output from Script.R is caused by an inForm bug that writes incorrect percent values to the cell seg summary file. The file contains values such as "3,234.56%" which phenoptr::read_cell_seg_data does not convert correctly.

Data is already in microns, no conversion performed
Joining, by = c("Slide ID", "Tissue Category")
Warning messages:
1: In .f(.x[[i]], ...) : NAs introduced by coercion
2: In .f(.x[[i]], ...) : NAs introduced by coercion
3: In .f(.x[[i]], ...) : NAs introduced by coercion
AB-Kent commented 4 years ago

This is an inForm issue, will not fix in phenoptr.