Mean expression fails when phenotype includes a formula

akoyabio / phenoptrReports

Create analysis reports from inForm data.

https://akoyabio.github.io/phenoptrReports

zlib License

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Mean expression fails when phenotype includes a formula #47

Closed AB-Kent closed 3 years ago

AB-Kent commented 3 years ago

In the analysis app, if a phenotype containing a formula - for example CK+/~`Membrane PDL1 (Opal 520) Mean`>1 - is selected to compute mean expression of a marker, the analysis script will fail with a message such as Warning: Error in check_phenotypes: These phenotypes are not defined: CK+/~`Membrane PDL1 (Opal 520) Mean`>1.