I have tried to train Redfold and run it on some fasta files. Both times I received a key error.
redfold Traceback (most recent call last): File "/home/ec2-user/.local/bin/redfold", line 8, in <module> sys.exit(main()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/__main__.py", line 15, in main process_data(args, file1,file2) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 129, in process_data one_hot_mat2= one_hot_2m(seq.upper()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 40, in one_hot_2m feat[L1-1,dcBASE2[Id1]]= 1 KeyError: 'AT'
redfold -train Traceback (most recent call last): File "/home/ec2-user/.local/bin/redfold", line 8, in <module> sys.exit(main()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/__main__.py", line 15, in main process_data(args, file1,file2) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 129, in process_data one_hot_mat2= one_hot_2m(seq.upper()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 40, in one_hot_2m feat[L1-1,dcBASE2[Id1]]= 1 KeyError: 'AK'
I have tried to train Redfold and run it on some fasta files. Both times I received a key error.
redfold
Traceback (most recent call last): File "/home/ec2-user/.local/bin/redfold", line 8, in <module> sys.exit(main()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/__main__.py", line 15, in main process_data(args, file1,file2) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 129, in process_data one_hot_mat2= one_hot_2m(seq.upper()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 40, in one_hot_2m feat[L1-1,dcBASE2[Id1]]= 1 KeyError: 'AT'redfold -train
Traceback (most recent call last): File "/home/ec2-user/.local/bin/redfold", line 8, in <module> sys.exit(main()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/__main__.py", line 15, in main process_data(args, file1,file2) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 129, in process_data one_hot_mat2= one_hot_2m(seq.upper()) File "/home/ec2-user/.local/lib/python3.7/site-packages/redfold/process_data.py", line 40, in one_hot_2m feat[L1-1,dcBASE2[Id1]]= 1 KeyError: 'AK'Is there a way to resolve this?