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al-mcintyre / mCaller

A python program to call methylation (m6A in DNA) from nanopore signal data
MIT License
43 stars 16 forks source link

Model for R9.4? #1

Closed yoshihikosuzuki closed 7 years ago

yoshihikosuzuki commented 7 years ago

Hi, I'm very excited to try your algorithm.

I'm just wondering whether you have a model for R9.4 flow cells. "model_NN_6_m6A.pkl" or "mod_NN_6_m6A.pkl" is the one?

al-mcintyre commented 7 years ago

mod_NN_6_m6A.pkl is the correct one for R9.4, r95_model_NN_6_m6A.pkl for R9.5.

model_NN_6_m6A.pkl is the default name when you train a new model, but the uploaded version is trained on very limited test data.

yoshihikosuzuki commented 7 years ago

I got it, thanks a lot!

xingjianfeng100 commented 6 years ago

Hi ,I don't find the "model_NN_6_m6A.pkl" or "mod_NN_6_m6A.pkl" in the web, how can I download it ?

al-mcintyre commented 6 years ago

Sorry about that, I've re-added it as "r94_model_NN_6_m6A.pkl"

xingjianfeng100 commented 6 years ago

thank you very much @al-mcintyre ，it works . And another problem is the positions.txt file , there seem to be no mention about method to get it in paper,so how can I get it?