README.md instructions on make_bed.py: -m argument unknown

al-mcintyre / mCaller

A python program to call methylation (m6A in DNA) from nanopore signal data

MIT License

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README.md instructions on make_bed.py: -m argument unknown #18

Closed smoe closed 4 years ago

smoe commented 4 years ago

Hello, I ran into

$ ./make_bed.py -f testdata/masonread1.eventalign.diffs.6 -d 1 -m 0.5
usage: make_bed.py [-h] [-d MIN_READ_DEPTH] [-t MOD_THRESHOLD] -f MCALLER_FILE [-p POSITIONS] [--control] [--gff] [--ref REF] [--plot] [--plotsummary] [--plotdir PLOTDIR] [--vo] [-v]
make_bed.py: error: unrecognized arguments: -m 0.5

but it was just copy'n'pasted from the README.md.

al-mcintyre commented 4 years ago

Ah shoot, I changed that flag to '-t' to avoid conflict with the motif flag in the main script. Thanks for finding this; I'll update the README.