Closed bioinfo23 closed 7 months ago
Hi @bioinfo23 ,
I guess you are asking about the correlation plot generated by getCorrelation()
. This function will produce scatter plots of %-methylation values for each pair of samples, with the axis indicating %-methylation and the color representing the level of correlation (yellow-high, green-medium, blue-low). The "bar plots" on the diagonal are the %-methylation histograms as generated by getMethylationStats()
for each sample.
Best, Alex
I was hoping you could do into the red and black lines that are plotted and what they are
The lines are pairwise regression lines between the %-methylation distributions. The red line shows linear regression, while the darkgreen line represents the lowess smoothed regression line.
Best Alex
I have performed DMR analysis using Methylkit and have generated the correlation plot but i am not able to interpret it completely. Apart from the correlation % what do the bar plots, color and x and y axis signify?
Thanks