Hello, I apologize in advance as I am relatively new to bioinformatics. I attempted to use your tool to extract the most differentially methylated genes, but I am encountering a problem with the data organization. I feel that we don't have an object that contains both the positions of the methylated cytosines or CpG islands and the q-value. Could you please guide me on how to sort and extract these genes/islands/regions?
Hello, I apologize in advance as I am relatively new to bioinformatics. I attempted to use your tool to extract the most differentially methylated genes, but I am encountering a problem with the data organization. I feel that we don't have an object that contains both the positions of the methylated cytosines or CpG islands and the q-value. Could you please guide me on how to sort and extract these genes/islands/regions?