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alachins / raisd

RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
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All the regions are skipped (VCF input) #41

Open shaowei515 opened 1 year ago

shaowei515 commented 1 year ago

Hi Alachins, When I used my own VCF test file (three chromosomes, only 20~7000 SNPs per chromosome), SNP sets, samples and sites could be detected, but none SNP could. Therefore the whole regions were skipped. May I ask how to resolve this problem? I am looking forward to your reply.

shaowei515 commented 1 year ago

Hi Alachins, When I used my own VCF test file (three chromosomes, only 20~7000 SNPs per chromosome), SNP sets, samples and sites could be detected, but none SNP could. Therefore the whole regions were skipped. May I ask how to resolve this problem? I am looking forward to your reply.

I resolved. The $FORMAT column must be fully filled. Thanks!