Cannot get a Manhattan plot

alachins / raisd

RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors

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Cannot get a Manhattan plot #42

Open Candce opened 1 year ago

Candce commented 1 year ago

Hi I am wondering if you can help me. I used the A flag and have tried to run raisd in the directory with R. I have also checked that qqman is installed in R and I still cannot get a graph? here is my code /RAiSD/raisd-master/RAiSD -n Chr -I /home/reyn/Downloads/4/allchromrenamed.vcf -L 100000 -A 0.995 -f

alachins commented 1 year ago

It might be the case that one of the sets did not generate a report. This can happen if there are not enough SNPs for processing.

cx993 commented 11 months ago

I have encountered the same problem and would like to know how to solve it.