using RAiSD with unpolarized data

alachins / raisd

RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors

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using RAiSD with unpolarized data #49

Open TinaH10 opened 9 months ago

TinaH10 commented 9 months ago

Hello, after reading some of the closed comments I thought that I make my question more specific: is there any reason to include an outgroup with the -C option? If I include an outgroup, I am loosing SNPs (as the outgroup has more missing data, so I am wondering if it is better to use less SNPs but specify the outgroup or use more SNPs and don't specify the outgroup. Thank you!

alachins commented 7 months ago

Hi.

No, that's not possible.

Nikos

On Fri, Mar 1, 2024 at 7:00 PM TinaH10 @.***> wrote:

Hello,

I have a general question: is it possible to use the software with SNP data that has not been polarized with an outgroup? Like use the folded SFS?

Thanks!

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