Segmentation fault (core dumped) in my test run

[jyw-atgithub]

Dear @alachins , I was trying RAiSD with the command, RAiSD -f -n test -I SV.asm.vcf but the program stopped and report Segmentation fault (core dumped) error. The RAiSD -h command worked. I ran this on my school's public cluster and we had several gcc modules. However, none of the module worked. Those are the following info that I can gather. May I know what to do? Thank you!

Distro:  Rocky 8.8 Green Obsidian
gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18) <-- This is gcc/system

$module avail gcc
gcc/6.5.0  gcc/8.4.0  gcc/11.2.0  gcc/system

$RAiSD -h
RAiSD, Raised Accuracy in Sweep Detection
 This is version 2.9 (released in August 2020)
 Copyright (C) 2017, and GNU GPL'd, by Nikolaos Alachiotis and Pavlos Pavlidis
 Contact n.alachiotis/pavlidisp at gmail.com

 This is RAiSD version 2.9, released in August 2020

[alachins]

Hi Jen-Yu, I cannot help you with only the provided info. Can you repeat your run using valgrind and send me the report? Best regards, Nikos

On Thu, Apr 18, 2024 at 8:37 AM Jen-Yu @.***> wrote:

Dear @alachins https://github.com/alachins , I was trying RAiSD with the command, RAiSD -f -n test -I SV.asm.vcf but the program stopped and report Segmentation fault (core dumped) error. I ran this on my school's public cluster and we had several gcc modules. However, none of the module worked. Those are the following info that I can gather. May I know what to do? Thank you!

Distro: Rocky 8.8 Green Obsidian gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-18) <-- This is gcc/system

$module avail gcc gcc/6.5.0 gcc/8.4.0 gcc/11.2.0 gcc/system

— Reply to this email directly, view it on GitHub https://github.com/alachins/raisd/issues/52, or unsubscribe https://github.com/notifications/unsubscribe-auth/AALKWCX2S7GVFSHHYYERF6LY55S3HAVCNFSM6AAAAABGMUCE6GVHI2DSMVQWIX3LMV43ASLTON2WKOZSGI2DSOBXGA3DEMY . You are receiving this because you were mentioned.Message ID: @.***>

-- Nikolaos Alachiotis