Test run fails: Assertion `tstring[0]=='\n'' failed.

Hi there,

I've tried running the test script to check correct installation but I'm getting the error below. Any advice? Compilation seems to have worked without errors, so not sure what happened. I'm using the d1sweep.ms test file found here, since the suggested test data could not be downloaded as connection timed out.

RAiSD -n test_run -I d1sweep.ms -L 100000 -f

 ooooooooo.         .o.        o8o   .oooooo..o oooooooooo.
 `888   `Y88.      .888.       `"'  d8P'    `Y8 `888'   `Y8b
  888   .d88'     .8"888.     oooo  Y88bo.       888      888
  888ooo88P'     .8' `888.    `888   `"Y8888o.   888      888
  888`88b.      .88ooo8888.    888       `"Y88b  888      888
  888  `88b.   .8'     `888.   888  oo     .d8P  888     d88'
 o888o  o888o o88o     o8888o o888o 8""88888P'  o888bood8P'

 RAiSD, Raised Accuracy in Sweep Detection
 This is version 2.9 (released in August 2020)
 Copyright (C) 2017, and GNU GPL'd, by Nikolaos Alachiotis and Pavlos Pavlidis
 Contact n.alachiotis/pavlidisp at gmail.com

 Command: RAiSD -n test_run -I d1sweep.ms -L 100000 -f

MESSAGE: Converting input file d1sweep.ms to vcf (d1sweep.ms.vcf)RAiSD: sources/RAiSD_Fasta2Vcf.c:958: RSDDataset_convertFasta2VCF: Assertion `tstring[0]=='\n'' failed.

Also adding compilation log in case useful:

./install-RAiSD.sh
Deleting RAiSD symlink
Deleting directories
Creating directories
Beginning release build
Compiling: sources/RAiSD.c -> build/release/RAiSD.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_Chunk.c -> build/release/RAiSD_Chunk.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_CommandLine.c -> build/release/RAiSD_CommandLine.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_CommonOutliers.c -> build/release/RAiSD_CommonOutliers.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_Dataset.c -> build/release/RAiSD_Dataset.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_Fasta2Vcf.c -> build/release/RAiSD_Fasta2Vcf.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_HashMap.c -> build/release/RAiSD_HashMap.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_LinkedList.c -> build/release/RAiSD_LinkedList.o
sources/RAiSD_LinkedList.c: In function ‘RSDLinkedList_new’:
sources/RAiSD_LinkedList.c:39:2: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
  strncpy(newNode->snpData, snp, strlen(snp));
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         Compile time: 00:00:00
Compiling: sources/RAiSD_LutMap.c -> build/release/RAiSD_LutMap.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_MuStatistic.c -> build/release/RAiSD_MuStatistic.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_PatternPool.c -> build/release/RAiSD_PatternPool.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_Plot.c -> build/release/RAiSD_Plot.o
         Compile time: 00:00:01
Compiling: sources/RAiSD_Support.c -> build/release/RAiSD_Support.o
sources/RAiSD_Support.c: In function ‘VCFFileCheck’:
sources/RAiSD_Support.c:778:2: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
  strncpy(fileNameNew, fileName, STRING_SIZE);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sources/RAiSD_Support.c: In function ‘VCFFileCheckAndReorder’:
sources/RAiSD_Support.c:931:2: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
  strncpy(fileNameNew, fileName, STRING_SIZE);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         Compile time: 00:00:02
Compiling: sources/RAiSD_TreeMap.c -> build/release/RAiSD_TreeMap.o
         Compile time: 00:00:02
Linking: bin/release/RAiSD
         Link time: 00:00:13
Making symlink: RAiSD -> bin/release/RAiSD
Total build time: 00:00:28

alachins / raisd

Test run fails: Assertion `tstring[0]=='\n'' failed. #55