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alachins / sweed

Likelihood-based Selective Sweep Detection
GNU General Public License v3.0
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Segmentation fault #17

Open Youpu-Chen opened 2 years ago

Youpu-Chen commented 2 years ago

Hi, there. I am using the SweeD 4.0.0 version to do the analysis, but there is a problem which is the Segmentation fault.

The commond I am using is sweed/SweeD-P -name /scratch/users/lhe/complex/complex/23.Sweep/05.SweeD/4d.test/2022_3_23_4d_test -input /scratch/users/lhe/complex/complex/23.Sweep/05.SweeD/4d.test/input.vcf -chromList /scratch/users/lhe/complex/complex/23.Sweep/05.SweeD/4d.test/tmp_chromList.txt -grid 174 -minsnps 200 -maf 0.05 -missing 0.1 -ploidy 4 -folded

I am confused by this error, because I do not know how to solve it. I'll really appreciate it if you could give a hint.

Thank you very much.

image

Youpu-Chen commented 2 years ago

I try this one below, but it still won't work: https://github.com/alachins/sweed/issues/1

alachins commented 2 years ago

Hi Hongpu-Chen, It's rather difficult for me to help you with the information I have. You can consider removing all optional command-line arguments and see if that works and then gradually add them to find out which one causes the problem. Best regards, Nikos A.

On Wed, Mar 23, 2022 at 7:56 AM Hongpu-Chen @.***> wrote:

I try this one below, but it still won't work:

1

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

-- Nikolaos Alachiotis

Youpu-Chen commented 1 year ago

Thanks for your reply, I turned to use another server and it just worked out.

alachins @.***> 于2022年3月28日周一 18:03写道：

Hi Hongpu-Chen, It's rather difficult for me to help you with the information I have. You can consider removing all optional command-line arguments and see if that works and then gradually add them to find out which one causes the problem. Best regards, Nikos A.

On Wed, Mar 23, 2022 at 7:56 AM Hongpu-Chen @.***> wrote:

I try this one below, but it still won't work:

1

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

-- Nikolaos Alachiotis

— Reply to this email directly, view it on GitHub https://github.com/alachins/sweed/issues/17#issuecomment-1080450507, or unsubscribe https://github.com/notifications/unsubscribe-auth/AU7RW2BEY4HYUIY7UUWLWBDVCF7VFANCNFSM5RNBFFEA . You are receiving this because you authored the thread.Message ID: @.***>