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alachins / sweed

Likelihood-based Selective Sweep Detection
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Missingness error using SweeD version 4.0.0 #26

Open dhimanamar opened 1 year ago

dhimanamar commented 1 year ago

I am trying to run SweeD version 4.0.0 with -missing 0.1, but I am getting an error message, which looks like this:

ERROR: There are 141 nucleotides in line 167. Expected 142 (according to the first SNP in line 62).

SweeD: SweeD_Input.c:3867: readLine_VCF: Assertion `j==*SNP_SZ' failed. /var/spool/slurmd/job6372107/slurm_script: line 24: 21940 Aborted (core dumped) /home/dhiman/softwares/sweed-master/SweeD -name chr1_sugar_beet -input chr1_sugar_beet_0.6.recode.vcf -grid 575925 -folded -missing 0.1

Could you please help me out in fixing this problem, and also the threads flg does not work. Kind regards, Amar

luciaximena commented 4 months ago

Hi, I get the exact same error line, did you manage to solve it? If so, how?

Thanks! Ximena

Ahmad-40 commented 3 months ago

Hi, I have the same error line, did you manage to solve it? If yes, then guide.