Update input dataset and variable names - Githubissues

alan-turing-institute / CounterfactualCovid19

Repository for the Leeds-Turing project for simulating a counterfactual history of the growth of COVID-19 cases in Europe

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Update input dataset and variable names #45

Closed crangelsmith closed 3 years ago

crangelsmith commented 3 years ago

We need to merge PR https://github.com/alan-turing-institute/CounterfactualCovid19-inputs/pull/9 and updated both backend and the simulation code with it. Some variables need to be updated:

Change to "Date_start"

https://github.com/alan-turing-institute/CounterfactualCovid19/blob/0cc0253cba86c562c93d4a0de67354edb19d7b5d/counterfactual_calculations/src/process_data.py#L59

Replace calculation to read from dataset: https://github.com/alan-turing-institute/CounterfactualCovid19/blob/0cc0253cba86c562c93d4a0de67354edb19d7b5d/counterfactual_calculations/src/simulate_counterfactuals.py#L59