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alan-turing-institute / Palaeoanalytics

Repository for the Paleoanalytics project.

https://www.turing.ac.uk/research/research-projects/palaeoanalytics

GNU General Public License v3.0

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JOSS paper #107

Closed crangelsmith closed 3 years ago

crangelsmith commented 3 years ago

We need to start writing the text for the JOSS submission. Here are the requirements:

https://joss.readthedocs.io/en/latest/submitting.html

I have created a hackmd where we can start drafting the paper:

https://hackmd.io/AKH_L5lgRSSjsn3CTlBWAA

crangelsmith commented 3 years ago

Could we choose soon 1 image for which we have the author permission to show in the draft of the paper? Something like image 121 would be perfect.

JasonGellis commented 3 years ago

@crangelsmith I'll get to work! Is there any reaseon why we can't use one of our own images?

JasonGellis commented 3 years ago

rub_al_khali

Sample image by RAF. Rest will be uploaded to sharepoint

JasonGellis commented 3 years ago

[x] HackMD (use JOSS paper as an example). keep it short
[x] Flow chart (see pyveg). Also at to README
[x] upload images/CSV to Sharepoint
[x] Copy info from README to HackMD (wait for Camila)
[x] look at https://github.com/alan-turing-institute/monitoring-ecosystem-resilience/blob/master/pyveg/paper/paper.md
[x] Camila and Jason clean up repo, and SUBMIT

JasonGellis commented 3 years ago

pylithics_flowchart

@crangelsmith

Change the name “generate configuration file” to “read configuration file” and switch the direction of the arrow, because the config file is an input to the process.
May say “Pixel intensity thresholding”, instead of only thresholding?
Switch the order of boxes “classify surfaces” and “calculate metrics”, we first calculate the metrics and then do the classifications (using some of the metrics).

JasonGellis commented 3 years ago

@crangelsmith New version! pylithics_flowchart_2

crangelsmith commented 3 years ago

Fantastic @JasonGellis, I'll add it to our README and will open the repo :)

JasonGellis commented 3 years ago

Woo hoo

Best-

Jason Gellis

From: Camila Rangel Smith @.> Sent: Tuesday, August 31, 2021 2:54:48 PM To: alan-turing-institute/Palaeoanalytics @.> Cc: Jason Gellis @.>; Mention @.> Subject: Re: [alan-turing-institute/Palaeoanalytics] JOSS paper (#107)

Fantastic @JasonGellishttps://github.com/JasonGellis, I'll add it to our README and will open the repo :)

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JasonGellis commented 3 years ago

generate a PDF on JOSS. https://whedon.theoj.org/