Logging

[mastoffel]

Improves logging and adds a progress bar to compare().

• verbose argument with 0-2 controls logging to a StreamHandler (what the user sees in the terminal)
• log_to_file now logs everything to file (not controlled by verbose, just everything)
• all warnings from model fitting / cv / param search are captured too
• logger.exception now logs errors alongside tracebacks
• compare now has a progress bar with tqdm, which works in notebooks and terminal

resolves #68 #126 #127

[github-actions[bot]]

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
autoemulate
compare.py					229-231
cross_validate.py					57
hyperparam_searching.py					88-89
logging_config.py					29, 57, 64-65
autoemulate/emulators/neural_networks
mlp.py
tests
test_logging_config.py
Project Total

This report was generated by python-coverage-comment-action

[mastoffel]

@kallewesterling @bryanlimy if you two are busy, no worries, and I would just go ahead and merge this.

[kallewesterling]

Yeah I think it looks pretty good. Just haven't had a chance to test it out myself but I trust that you have done so! Happy for you to merge.

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[mastoffel]

LGTM!

Should we allow user to set where to log the file? Or at least make a print statement that logs are being stored to autoemulate.log.

Now allowing users to provide a path/filename for the log file, thanks @bryanlimy