Openfoam test

[nbarlowATI]

Working middleware for openfoam, includes output API endpoint, job_id as a UUID, all tests pass.

[codecov-io]

Codecov Report

Merging #20 into master will decrease coverage by 4.88%. The diff coverage is 69.1%.

@@            Coverage Diff             @@
##           master      #20      +/-   ##
==========================================
- Coverage   85.93%   81.05%   -4.89%     
==========================================
  Files          24       26       +2     
  Lines         917     1103     +186     
==========================================
+ Hits          788      894     +106     
- Misses        129      209      +80

Impacted Files	Coverage Δ
connection/constants.py	88.88% <100%> (+2.22%)	:arrow_up:
tests/fixtures.py	100% <100%> (ø)	:arrow_up:
tests/create_and_mint_case_using_stores.py	83.33% <100%> (+2.08%)	:arrow_up:
tests/create_mint_store.py	100% <100%> (ø)	:arrow_up:
tests/test_job_running.py	100% <100%> (ø)	:arrow_up:
routes/__init__.py	100% <100%> (ø)	:arrow_up:
tests/test_job_creation.py	100% <100%> (ø)	:arrow_up:
tests/test_case_list.py	100% <100%> (ø)	:arrow_up:
tests/decorators.py	78.26% <100%> (+13.97%)	:arrow_up:
routes/case_routes.py	81.81% <100%> (ø)	:arrow_up:
... and 13 more

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[nbarlowATI]

Hi @masonlr , did you purge your db and re-populate with the test data before trying this? This step is necessary because the schema has changed..
As far as I'm aware things should work at least as far as getting job output with the current openfoam_test branch of gateway_openfoam. I'll check all this out in a fresh clone though..

[masonlr]

Yep test data was purged. I think it was a matter of me having an incompatible set of submodules. I can confirm that this PR achieves the following:

• "running" an openfoam job from the frontend correctly patches and copies files to simulator
• job outputs are sent to Azure storage correctly using the AZURE_OUTPUT_CONTAINER variable

[masonlr]

For reference, this is the combination I tested with:

alan-turing-institute/gateway-frontend@f104d537 alan-turing-institute/gateway-middleware@054a033 alan-turing-institute/gateway-job-manager-openfoam@8acb64b alan-turing-institute/gateway-simulator-openfoam@e372c7b

We are currently aiming to update merge the corresponding branches into master on their respective submodules. Then we will update the umbrella gateway repo.