Features/44 internal migration

alan-turing-institute / vivarium_population_spenser

Vivarium microsimulation tools used to model population evolution with the SPENSER project

GNU General Public License v3.0

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Features/44 internal migration #45

Closed crangelsmith closed 4 years ago

crangelsmith commented 4 years ago

Closes #44

[x] Implementing internal migration module
[x] Get a requirement for minimum amount of time from last migration
[x] Start notebook pipeline

Extra implementation:

[x] Implement internal migration assignment functions based on dummy matrices
[x] Use OD matrices to compute real rates (@kasra-hosseini)

kasra-hosseini commented 4 years ago

@crangelsmith I added the OD matrix to the internal migration component. Also, updated the test.

crangelsmith commented 4 years ago

I removed the large OD matrix file and modified the test by adding a line that downloads the file before running (currently this is just a link from google drive but we can improve it once we have the new matrices). This allows the CI to run without the file being on the repo. I'll merge this PR and will start a fresh one once we have the new matrices from Luke. @kasra-hosseini

kasra-hosseini commented 4 years ago

Sounds good, thanks!