The largest bottle neck on running the simulation is the initial setup where all the rate tables are registered into the simulation state. This seems to take a long time (around 20 min per table), around 2 hours in total on the full pipeline.
A good investment of time could be in investigate how to speed this up (currently this library uses methods from the base vivarium library for this step).
The largest bottle neck on running the simulation is the initial setup where all the rate tables are registered into the simulation state. This seems to take a long time (around 20 min per table), around 2 hours in total on the full pipeline.
A good investment of time could be in investigate how to speed this up (currently this library uses methods from the base vivarium library for this step).