Closed oliviaAB closed 4 years ago
Sorry, I should have checked with you first. I forgot you were using higher-order reactions. Will get this working again in a day or two.
Will you need reactions of order > 3 any time in the near future?
That's great thank you! Yes my model doesn't have theoretical limits. Do you think that can be a problem? In the meantime I added a line in my code to download v0.5.1 of BioSimulator so there's no rush :)
This has been addressed in the latest commit (a2904f2).
I will tag a new release after addressing a couple other issues (e.g. documentation not showing). Feel free to point out any other issues if you happen to test on sismonr.
Great thanks, I'll play with it in the next couple of days :) so far so good, the issue about the number of reactants is solved.
Hi,
I'm using Biosimulator for my R package sismonr, to simulate gene expression. My model can involve reactions with more than 3 reactants, e.g.
In the reaction above, a RNA molecule bound by 3 regulators is degraded, releasing the 3 regulator molecules. The RNA molecule is modelled as the sum of its regulator binding sites, e.g. RBS1GCN1_reg1 + RBS1GCN1_reg2 + RBS1GCN1_reg3. However with the change in BioSimulator v0.9.2, (notably with the function
get_kinetic_law()
), I can't simulate my system. I get the error:Is there a way to allow for this type of reaction, as it was possible before?
Thanks!