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alanlhutchison / empirical-JTK_CYCLE-with-asymmetry

This repository contains the code described in Hutchison, Maienschein-Cline, and Chiang et al. (2015) Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PLoS Comput Biol 11(3): e1004094. doi:10.1371/journal.pcbi.1004094
MIT License
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Proper Means of Specifying Duplicate Timepoints #4

Open aleccrowell opened 7 years ago

aleccrowell commented 7 years ago

Is there a recommended way for specifying duplicate time points to eJTK? Should they just be identically labelled? I couldn't find anything in the documentation on this. Thanks very much!

alanlhutchison commented 7 years ago

Hi,

The algorithm will automatically mod 24 the data, so you can leave them different or make them the same depending on preference.

Thank you for brining this to my attention. I will update the README.

Alan

On Sunday, September 18, 2016, Alec Crowell notifications@github.com wrote:

Is there a recommended way for specifying duplicate time points to eJTK? Should they just be identically labelled? I couldn't find anything in the documentation on this. Thanks very much!

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Alan L Hutchison Ph.D. Biophysics MD Candidate Pritzker School of Medicine University of Chicago