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alanocallaghan / scater

Clone of the Bioconductor repository for the scater package.
https://bioconductor.org/packages/devel/bioc/html/scater.html
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Adding alias to exprs_values argument #186

Closed antagomir closed 1 year ago

antagomir commented 1 year ago

Some other packages use assay_name as the argument to choose the assay for plotting SE objects.

The assay_name refers more explicitly to assays than exprs_values. I would therefore suggest to include an alias assay_name as an alternative to exprs_values.

antagomir commented 1 year ago

We can prepare a PR if this suggestion is accepted.

alanocallaghan commented 1 year ago

I think assay_name is much clearer, I might even deprecate the exprs_values equivalents eventually

antagomir commented 1 year ago

PR created #187