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alapo / Literate-Programming

This is the repository for the Literate Programming Workshop
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Issues with RMarkdown with Module05.Rmd #17

Closed chazdm closed 3 years ago

chazdm commented 3 years ago

Hello! I am having issues with the RMarkdown from last workshop. I ran lines 49-53 as stated in the Module05.Rmd script.

i``` f (!require("pacman")) install.packages("pacman") # if pacman is not installed, the install it. pacman::p_load(effectsize, ggpubr, ggstatsplot, googlesheets4, janitor, jtools, knitr, parameters, rio, remotes, report, rstatix, tidyverse, see, sjPlot, sjmisc) # load/install required packages

Load your data ----------

df <- read_sheet("https://docs.google.com/spreadsheets/d/1fFVmBFpdAKxzLMT8dx7pZm48mo9CE3kIwYhrkaZj7NM", sheet = "1") 


This worked fine. However when I tried to knit the document, I got several error messages. The final one being as follows:

sjmisc installed
Quitting from lines 48-55 (Module05.Rmd) 
Error in read_sheet("https://docs.google.com/spreadsheets/d/1fFVmBFpdAKxzLMT8dx7pZm48mo9CE3kIwYhrkaZj7NM",  : 
  could not find function "read_sheet"
Calls: <Anonymous> ... handle -> withCallingHandlers -> withVisible -> eval -> eval
In addition: There were 15 warnings (use warnings() to see them)

Execution halted

devtools::session_info()
> devtools::session_info()
- Session info ------------------------------------------------------------------------
 setting  value                       
 version  R version 4.0.0 (2020-04-24)
 os       Windows 10 x64              
 system   x86_64, mingw32             
 ui       RStudio                     
 language (EN)                        
 collate  English_Canada.1252         
 ctype    English_Canada.1252         
 tz       America/Denver              
 date     2021-04-06                  

- Packages ----------------------------------------------------------------------------
 ! package             * version    date       lib
   abind                 1.4-5      2016-07-21 [1]
   apastats            * 0.3        2021-03-16 [1]
   askpass               1.1        2019-01-13 [1]
   assertthat            0.2.1      2019-03-21 [1]
   backports             1.2.1      2020-12-09 [1]
   BayesFactor           0.9.12-4.2 2018-05-19 [1]
   bayestestR            0.8.2      2021-01-26 [1]
   BiocManager           1.30.10    2019-11-16 [1]
   boot                  1.3-24     2019-12-20 [2]
   broom                 0.7.5      2021-02-19 [1]
   BWStest               0.2.2      2018-10-18 [1]
   cachem                1.0.4      2021-02-13 [1]
   callr                 3.5.1      2020-10-13 [1]
   car                   3.0-10     2020-09-29 [1]
   carData               3.0-4      2020-05-22 [1]
   cellranger            1.1.0      2016-07-27 [1]
   cli                   2.3.1      2021-02-23 [1]
   coda                  0.19-4     2020-09-30 [1]
   colorspace            2.0-0      2020-11-11 [1]
   correlation           0.6.0      2021-02-12 [1]
   crayon                1.4.1      2021-02-08 [1]
   credentials           1.3.0      2020-07-21 [1]
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   data.table            1.14.0     2021-02-21 [1]
   DBI                   1.1.1      2021-01-15 [1]
   dbplyr                2.1.0      2021-02-03 [1]
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   devtools              2.3.2      2020-09-18 [1]
   digest                0.6.27     2020-10-24 [1]
   dplyr               * 1.0.5      2021-03-05 [1]
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   estimability          1.3        2018-02-11 [1]
   evaluate              0.14       2019-05-28 [1]
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   fastmap               1.1.0      2021-01-25 [1]
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   foreign               0.8-78     2020-04-13 [2]
   fs                    1.5.0      2020-07-31 [1]
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   generics              0.1.0      2020-10-31 [1]
   ggcorrplot            0.1.3      2019-05-19 [1]
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   ggExtra               0.9        2019-08-27 [1]
   ggplot2             * 3.3.3      2020-12-30 [1]
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   ggsignif              0.6.1      2021-02-23 [1]
   ggstatsplot         * 0.7.1      2021-03-11 [1]
   glue                  1.4.2      2020-08-27 [1]
   gmp                   0.6-2      2021-01-07 [1]
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   googlesheets4       * 0.3.0      2021-03-04 [1]
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   gtools                3.8.2      2020-03-31 [1]
   haven                 2.3.1      2020-06-01 [1]
   hms                   1.0.0      2021-01-13 [1]
   htmltools             0.5.1.1    2021-01-22 [1]
   httpuv                1.5.5      2021-01-13 [1]
   httr                  1.4.2      2020-07-20 [1]
   insight               0.13.1     2021-02-22 [1]
   ipmisc                6.0.0      2021-02-13 [1]
   janitor             * 2.1.0      2021-01-05 [1]
   jsonlite              1.7.2      2020-12-09 [1]
   jtools              * 2.1.3      2021-03-12 [1]
   knitr               * 1.31       2021-01-27 [1]
   kSamples              1.2-9      2019-05-20 [1]
   LanguageToolR         0.1.3      2021-03-16 [1]
   later                 1.1.0.1    2020-06-05 [1]
   lattice               0.20-41    2020-04-02 [2]
   lifecycle             1.0.0      2021-02-15 [1]
   lme4                  1.1-26     2020-12-01 [1]
   lubridate             1.7.10     2021-02-26 [1]
   magrittr              2.0.1      2020-11-17 [1]
   MASS                  7.3-51.5   2019-12-20 [2]
   Matrix                1.2-18     2019-11-27 [2]
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   mc2d                  0.1-18     2017-03-06 [1]
   memoise               2.0.0      2021-01-26 [1]
   mime                  0.10       2021-02-13 [1]
   miniUI                0.1.1.1    2018-05-18 [1]
   minqa                 1.2.4      2014-10-09 [1]
   modelr                0.1.8      2020-05-19 [1]
   multcompView          0.1-8      2019-12-19 [1]
   munsell               0.5.0      2018-06-12 [1]
   mvtnorm               1.1-1      2020-06-09 [1]
   nlme                  3.1-147    2020-04-13 [2]
   nloptr                1.2.2.2    2020-07-02 [1]
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   openssl               1.4.3      2020-09-18 [1]
   openxlsx              4.2.3      2020-10-27 [1]
   pacman              * 0.5.1      2019-03-11 [1]
   pairwiseComparisons   3.1.3      2021-02-03 [1]
   paletteer             1.3.0      2021-01-06 [1]
   pander                0.6.3      2018-11-06 [1]
   parameters          * 0.12.0     2021-02-21 [1]
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   pillar                1.5.1      2021-03-05 [1]
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   ps                    1.6.0      2021-02-28 [1]
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   rprojroot             2.0.2      2020-11-15 [1]
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   rstatix             * 0.7.0      2021-02-13 [1]
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   rvg                   0.2.5      2020-06-30 [1]
   scales                1.1.1      2020-05-11 [1]
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   sjlabelled            1.1.7      2020-09-24 [1]
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   sjstats               0.18.1     2021-01-09 [1]
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   SuppDists             1.1-9.5    2020-01-18 [1]
   sys                   3.4        2020-07-23 [1]
   systemfonts           1.0.1      2021-02-09 [1]
   testthat              3.0.2      2021-02-14 [1]
   tibble              * 3.1.0      2021-02-25 [1]
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   tidyselect            1.1.0      2020-05-11 [1]
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   tinytex               0.30       2021-03-04 [1]
   usethis               2.0.1      2021-02-10 [1]
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   uuid                  0.1-4      2020-02-26 [1]
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   yaml                  2.2.1      2020-02-01 [1]
   zeallot               0.1.0      2018-01-28 [1]
   zip                   2.1.1      2020-08-27 [1]
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[1] C:/Users/charl/Documents/R/win-library/4.0
[2] C:/Program Files/R/R-4.0.0/library

 R -- Package was removed from disk.

Comment: Please advise on how I can fix this. Thank you.
chazdm commented 3 years ago

Hi Andrew! I was able to resolve this issue. Just reinstalled Easy Stats package again. Thank you!

alapo commented 3 years ago

That's awesome!! congrats