How do I install and run?

heyerbobby commented 4 years ago

Hi, I've been trying to install and run this but haven't had any luck.

I'm using Pycharm w Anaconda on a Windows 10 pc,
I've created a new project
I've downloaded all the files from github and placed them in the project folder
I've created and activated the conda env using environment.yml

But after that I'm lost.

I've tried typing the ./get_gfs.py ... into the terminal, but that didn't like the './'
I've tried without the './' in terminal, but it didn't seem to do anything
I've tried running the get_gfs script but its got no inputs

Any chance for a more detailed how to guide for beginners? would be much appreciated

heyerbobby commented 4 years ago

Figured out my problem, I had to type 'python' in the terminal before typing the get_gfs....

albertotb commented 4 years ago

Great, if you have any questions or features you would like to see implemented please let me know

Best regards, Alberto

On Thu, 21 Nov 2019 at 06:31, Bobby Heyer notifications@github.com wrote:

Figured out my problem, I had to type 'python' in the terminal before typing the get_gfs....

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/albertotb/get-gfs/issues/2?email_source=notifications&email_token=ABRWQARROWUI5LBQUZZWSGDQUYMMPA5CNFSM4JP4WHA2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEEZASWY#issuecomment-556927323, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABRWQAW52JKJ7JHBTHYHGKLQUYMMPANCNFSM4JP4WHAQ .

heyerbobby commented 4 years ago

Hi @albertotb Thanks for your quick reply, I do a quick question.

Sometimes when I run the script, or when I run the script for a second time, I'll get various timeout errors. (as below) do you know why this is happening?

Unexpected error: <class 'UnboundLocalError'>
local variable 'dataset' referenced before assignment
Traceback (most recent call last):
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 384, in _make_request
    six.raise_from(e, None)
  File "<string>", line 2, in raise_from
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 380, in _make_request
    httplib_response = conn.getresponse()
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\http\client.py", line 1344, in getresponse
    response.begin()
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\http\client.py", line 306, in begin
    version, status, reason = self._read_status()
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\http\client.py", line 267, in _read_status
    line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\socket.py", line 589, in readinto
    return self._sock.recv_into(b)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\contrib\pyopenssl.py", line 310, in recv_into
    raise timeout('The read operation timed out')
socket.timeout: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\requests\adapters.py", line 449, in send
    timeout=timeout
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 638, in urlopen
    _stacktrace=sys.exc_info()[2])
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\util\retry.py", line 368, in increment
    raise six.reraise(type(error), error, _stacktrace)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\packages\six.py", line 686, in reraise
    raise value
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 600, in urlopen
    chunked=chunked)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 386, in _make_request
    self._raise_timeout(err=e, url=url, timeout_value=read_timeout)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\urllib3\connectionpool.py", line 306, in _raise_timeout
    raise ReadTimeoutError(self, url, "Read timed out. (read timeout=%s)" % timeout_value)
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='nomads.ncep.noaa.gov', port=9090): Read timed out. (read timeout=120)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\net.py", line 79, in create_request_from_session
    timeout=timeout)) as head:
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\requests\sessions.py", line 568, in head
    return self.request('HEAD', url, **kwargs)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\requests\sessions.py", line 533, in request
    resp = self.send(prep, **send_kwargs)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\requests\sessions.py", line 646, in send
    r = adapter.send(request, **kwargs)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\requests\adapters.py", line 529, in send
    raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='nomads.ncep.noaa.gov', port=9090): Read timed out. (read timeout=120)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "get_gfs.py", line 99, in get_file
    dataset = open_dods(request + ','.join(var_list))
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\client.py", line 112, in open_dods
    r = GET(url, application, session, timeout=timeout)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\net.py", line 27, in GET
    timeout=timeout)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\net.py", line 50, in follow_redirect
    req = create_request(url, session=session, timeout=timeout)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\net.py", line 72, in create_request
    timeout=timeout)
  File "C:\Users\bheyer\Continuum\anaconda3\envs\CondaEnv\lib\site-packages\pydap\net.py", line 101, in create_request_from_session
    raise HTTPError('Timeout')
webob.exc.HTTPError: Timeout

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "get_gfs.py", line 240, in main
    verbose=args.verbose)
  File "get_gfs.py", line 169, in save_dataset
    data_e = get_file(request, param_e, var_conf, time, lat, lon_e, verbose=verbose)
  File "get_gfs.py", line 101, in get_file
    print(dataset)
UnboundLocalError: local variable 'dataset' referenced before assignment

albertotb commented 4 years ago

Please share the command you are running that sometimes throws the timeout errors

heyerbobby commented 4 years ago

Hi @albertotb I was running python get_gfs.py -s 1 -r 0.25 -t 0 120 -x 149.5 150.5 -y -24.5 -23.5 -p 0 2 -c example_conf.json 20191117 18 I think because i was requesting 120 hours it was timing out, I added 'timeout=300' and the problem was solved.

albertotb / get-gfs

How do I install and run? #2