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albertozeni / LOGAN

LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.
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Seqan free version #3

Closed armintoepfer closed 4 years ago

armintoepfer commented 4 years ago

Hi!

Is there any chance to provide a seqan free version? I'd love to use it, but I don't want to add seqan, as it's intrusive and code hog.

Thank you! Armin

albertozeni commented 4 years ago

Hi Armin,

I think the version inserted in the demo is already seqan free. Anyway, I will update a new version without seqan dependencies over the weekend if the current one still requires seqan. Thank you for suggesting this update,

Best, Alberto

armintoepfer commented 4 years ago

Amazing. Thank you!

armintoepfer commented 4 years ago

Me again. I think I misunderstood your library initially. I want to pairwise align sequences and get the base alignment. Is that possible, either directly or by computing the Viterbi path on my own?

albertozeni commented 4 years ago

Hi Armin, do you want to align sequences without using the seeds or do you want to compute them on your own? Also, I checked the repo and the library does not require seqan to build, so that problem solved itself. If you want to continue this conversation I think that It might be easier to continue chatting via email: alberto.zeni@mail.polimi.it