Using LOGAN just for pairwise-alignment

albertozeni / LOGAN

LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.

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Using LOGAN just for pairwise-alignment #8

Closed ChristosMatzoros closed 11 months ago

ChristosMatzoros commented 2 years ago

Hello,

Can I use LOGAN just to align a batch of sequence pairs (query/target)? I've seen that your sample program does seeding and extension if I am not mistaken. Could you provide me with an example of how to align a batch of sequences?