alces-software / packager-base

Package dependency, build and installation instructions for use with the Alces Clusterware gridware tool
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CentOS 7 - Boost 1.55.0 / 1.58.0 installation problems #3

Closed vlj91 closed 8 years ago

vlj91 commented 8 years ago

Trying to install boost 1.55.0 & 1.58.0 on CentOS 7/ClusterWare 2016.01

[root@login1(mycluster) etc]# module avail
---  /opt/gridware/bio/el7/etc/modules  ---
  apps/bamtools/2.3.0/gcc-4.8.5
  apps/bcftools/1.2/gcc-4.8.5
  apps/bedtools/2.22.0/gcc-4.8.5
  apps/bowtie/1.1.0/gcc-4.8.5
  apps/bowtie2/2.2.6/gcc-4.8.5
  apps/bwa/0.7.12/gcc-4.8.5
  apps/cmake/3.0.2/gcc-4.8.5
  apps/fastqc/0.11.3/noarch
  apps/htslib/1.2.1/gcc-4.8.5
  apps/picard/1.130/bin
  apps/python/2.7.8/gcc-4.8.5
  apps/samtools/0.1.18/gcc-4.8.5
  apps/tabix/0.2.6/gcc-4.8.5
  apps/varscan/2.3.6/noarch
  apps/vcftools/0.1.12b/gcc-4.8.5
  compilers/gcc/system
  libs/eigen/3.2.4/gcc-4.8.5
  libs/gcc/system
  mpi/openmpi/1.8.5/gcc-4.8.5
  null
---  /opt/gridware/local/el7/etc/modules  ---
  compilers/gcc/system
  libs/gcc/system
  null
---  /opt/clusterware/etc/modules  ---
  services/gridscheduler
Proceed (Y/N)? y
           Clean ... OK

 > Preparing package sources
        Download --> boost_1_55_0.tar.bz2 ... SKIP (Existing source file detected)
          Verify --> boost_1_55_0.tar.bz2 ... OK

 > Preparing for installation
           Mkdir ... OK (/var/cache/gridware/src/libs/boost/1.55.0/gcc-4.8.5+openmpi-1.8.5+python-2.7.8)
         Extract ... OK

 > Proceeding with installation
         Compile ... ERROR: Package compilation failed

   Extract of compilation script error output:
   > link.jam: No such file or directory

Full log file attached boostoutput.txt

mjtko commented 8 years ago

The link.jam: No such file or directory error message is benign, and the log file attached appears only to be the stage.log file -- do you have the install.log file? It's likely the problem is in there.

mjtko commented 8 years ago

@vlj91 confirmed there is no install.log. Looking again at the stage.log shows that the bzip2 development package appears to be missing -- can you yum install bzip2-devel and trying again please?

vlj91 commented 8 years ago

Thanks, that fixed it!