alchemistry / alchemical-best-practices

Best practice document for alchemical free energy calculations going to livecoms journal
Creative Commons Attribution 4.0 International
62 stars 17 forks source link

Section 2 #84

Closed ppxasjsm closed 4 years ago

ppxasjsm commented 4 years ago

I incorporated a bunch of suggestions from people here and in general just gives a quick overview of the paper. If people could add to the list of symbols that might be helpful.

Also list of common terminology Aye or Ney?

agrossfield commented 4 years ago

For what it’s worth, a broken out list of common terms, perhaps formatted like a glossary, can be really useful for new students trying to use your paper to get up to speed. We did something like that in the statistical error best practices paper.

Dr. Alan Grossfield Department of Biochemistry and Biophysics University of Rochester Medical Center

On Jan 20, 2020, at 4:36 PM, Toni Mey notifications@github.com wrote:



I incorporated a bunch of suggestions from people here and in general just gives a quick overview of the paper. If people could add to the list of symbols that might be helpful.

Also list of common terminology Aye or Ney?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_michellab_alchemical-2Dbest-2Dpractices_issues_84-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DADH754W77VAVOOFSSKHXIA3Q6YKONA5CNFSM4KJKGQFKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IHOYTKA&d=DwMCaQ&c=4sF48jRmVAe_CH-k9mXYXEGfSnM3bY53YSKuLUQRxhA&r=49qnaP-kgQR_zujl5kbj_PmvQeXyz1NAoiLoIzsc27zuRX32UDM2oX8NQCaAsZzH&m=PrCQzA12b2x6-DU0WFebvqWMQCYhiIhbarcFw9Z_FAg&s=4WvtbmNCWjey01cQUfS-qXmXUZ0P8pMRJpYGPQzHvfU&e=, or unsubscribehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ADH754UKAHMCZRG3O7FR4T3Q6YKONANCNFSM4KJKGQFA&d=DwMCaQ&c=4sF48jRmVAe_CH-k9mXYXEGfSnM3bY53YSKuLUQRxhA&r=49qnaP-kgQR_zujl5kbj_PmvQeXyz1NAoiLoIzsc27zuRX32UDM2oX8NQCaAsZzH&m=PrCQzA12b2x6-DU0WFebvqWMQCYhiIhbarcFw9Z_FAg&s=_qXZIkYQH_1fJczqynnPuU7KnhmJOKNK2PzMmiffU9E&e=.

ppxasjsm commented 4 years ago

Good to know! So will expand on it. I'll take a look on how you did it.

davidlmobley commented 4 years ago

Enthused about list of common terminology. I'll have a quick look at that section and the tables there.

davidlmobley commented 4 years ago

OK, took a pass.