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aldanor / hdf5-rust

HDF5 for Rust
https://docs.rs/hdf5
Apache License 2.0
308 stars 82 forks source link

Clean clone of hdf5-rust does not build out of the box #271

Open CiaranWelsh opened 7 months ago

CiaranWelsh commented 7 months ago

Hey there,

Just to let you know that this repository currently does not build from a clean checkout.

(base) ciaran@Ciarans-MacBook-Pro luna-for-prune % git clone https://github.com/aldanor/hdf5-rust.git --recurse-submodules
Cloning into 'hdf5-rust'... remote: Enumerating objects: 8801, done. remote: Counting objects: 100% (1606/1606), done. remote: Compressing objects: 100% (424/424), done. remote: Total 8801 (delta 1249), reused 1355 (delta 1133), pack-reused 7195 Receiving objects: 100% (8801/8801), 1.82 MiB | 1.43 MiB/s, done. Resolving deltas: 100% (6023/6023), done. Submodule 'hdf5' (https://github.com/HDFGroup/hdf5.git) registered for path 'hdf5-src/ext/hdf5' Cloning into '/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-src/ext/hdf5'... remote: Enumerating objects: 506188, done.
remote: Counting objects: 100% (6108/6108), done.
remote: Compressing objects: 100% (1625/1625), done.
remote: Total 506188 (delta 5900), reused 4603 (delta 4482), pack-reused 500080
Receiving objects: 100% (506188/506188), 388.01 MiB | 948.00 KiB/s, done. Resolving deltas: 100% (436280/436280), done. Submodule path 'hdf5-src/ext/hdf5': checked out 'db30c2da68ece4a155e9e50c28ec16d6057509b2'

(base) ciaran@Ciarans-MacBook-Pro hdf5-rust % cargo build --release Updating crates.io index Compiling autocfg v1.1.0 Compiling memchr v2.7.1 Compiling proc-macro2 v1.0.78 Compiling version_check v0.9.4 Compiling regex-syntax v0.8.2 Compiling cfg-if v1.0.0 Compiling unicode-ident v1.0.12 Compiling libc v0.2.153 Compiling parking_lot_core v0.9.9 Compiling rawpointer v0.2.1 Compiling hdf5-types v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-types) Compiling libloading v0.8.1 Compiling paste v1.0.14 Compiling smallvec v1.13.1 Compiling scopeguard v1.2.0 Compiling ascii v1.1.0 Compiling hdf5 v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5) Compiling proc-macro-error-attr v1.0.4 Compiling aho-corasick v1.1.2 Compiling num-traits v0.2.18 Compiling proc-macro-error v1.0.4 Compiling matrixmultiply v0.3.8 Compiling lock_api v0.4.11 Compiling bitflags v2.4.2 Compiling lazy_static v1.4.0 Compiling regex-automata v0.4.5 Compiling num-integer v0.1.46 Compiling num-complex v0.4.5 Compiling quote v1.0.35 Compiling syn v2.0.51 Compiling regex v1.10.3 Compiling parking_lot v0.12.1 Compiling ndarray v0.15.6 Compiling hdf5-sys v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-sys) Compiling hdf5-derive v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-derive) error: failed to run custom build command for hdf5-sys v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-sys)

Caused by: process didn't exit successfully: /Users/Ciaran/luna-for-prune/hdf5-rust/target/release/build/hdf5-sys-98b7849df7e55dfb/build-script-build (exit status: 101) --- stdout Attempting to find HDF5 via Homebrew (any version)...

--- stderr thread 'main' panicked at hdf5-sys/build.rs:595:13: Unable to locate HDF5 root directory and/or headers. note: run with RUST_BACKTRACE=1 environment variable to display a backtrace warning: build failed, waiting for other jobs to finish... (base) ciaran@Ciarans-MacBook-Pro hdf5-rust %

Likely you need to update the path pointed to by your submodule

mulimoen commented 7 months ago

The default build assumes hdf5 (the C library) is already installed on the machine. If you wish to build using the included source you will need git submodule update --init followed by cargo build --workspace --exclude hdf5-derive --features static