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alekseyzimin / masurca

GNU General Public License v3.0
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Invalid line 'CONFIG_PATH=' in assemble.sh configuration file #216

Open ruthpg opened 3 years ago

ruthpg commented 3 years ago

Hello,

I have been trying to run masurca but I keep running into the same error. After modifying the configuration file I manage to create the assemble.sh, however when I try to run masurca asssemble.sh I keep getting the following error:

Error line 4 of configuration file 'assemble.sh':
Invalid line 'CONFIG_PATH="/export/data01/user/rperez/Masurca/CCMPXXXX/configuration.txt"'

I do not understand what the problem can be since my the path in the assemble.sh script and the location of my configuration file actually match and the file configuration.txt actually exists... Does anyone know what could be causing this problem?

Thanks!!

amy0071 commented 3 years ago

I'm getting the same error. Were you able to figure out a solution?

mcbuitrago10 commented 3 years ago

I had the same error, but you only need to run assemble.sh using bash, you don't need to call masurca.

Hope it helps.