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alekseyzimin / masurca

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Assembly with flye failed #224

Open ps120195 opened 3 years ago

ps120195 commented 3 years ago

Hi, I am trying to run Masurca for Hybrid Assembly of ONT with illumina short reads, I am getting this below error after running for some time

Fri Feb 26 11:59:35 UTC 2021] Output prefix mr.41.17.12.0.02 [Fri Feb 26 11:59:35 UTC 2021] Pre-correction and initial filtering of the long reads [Fri Feb 26 12:26:55 UTC 2021] Failed to pre-correct .fastq.gz file, please check your data! [Fri Feb 26 12:26:55 UTC 2021] Assembly with flye failed, see files under flye/

I checked the path of my file in config,txt, it is correct. I already have done long read assembly with the same nanopore data but why I am getting this pre-correct step error in Masurca? Please help

bdentinger commented 3 years ago

check the .err file. i had this issue and it was because i needed to install numactl.

aakashsur commented 3 years ago

Yes I ran into the same issue, this should probably be a check in configure

asgiraldoc commented 3 years ago

check the .err file. i had this issue and it was because i needed to install numactl.

Yes, that worked for me :D thank you