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alekseyzimin / masurca

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Can't fork: Resource temporarily unavailable #307

Open WJT0925 opened 1 year ago

WJT0925 commented 1 year ago

No need to run meryl for OBT (OBT is disabled). No need to run meryl for OVL (genome.nmers.ovl.fasta exists). ----------------------------------------START Sun Dec 18 16:40:25 2022 /es01/home/liljn157/.conda/envs/masurca/CA8/Linux-amd64/bin/overlap_partition \ -g /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/genome.gkpStore \ -bl 10000000 \ -bs 0 \ -rs 37442910 \ -rl 0 \ -o /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper \

/es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap_partition.err 2>&1 ----------------------------------------END Sun Dec 18 16:40:35 2022 (10 seconds) Created 8885 overlap jobs. Last batch '009', last job '008885'. ----------------------------------------START CONCURRENT Sun Dec 18 16:40:35 2022 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 1 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000001.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 2 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000002.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 3 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000003.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 4 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000004.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 5 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000005.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 6 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000006.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 7 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000007.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 8 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000008.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 9 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000009.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 10 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000010.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 11 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000011.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 12 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000012.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 13 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000013.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 14 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000014.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 15 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000015.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 16 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000016.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 17 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000017.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 18 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000018.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 19 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000019.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 20 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000020.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 21 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000021.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 22 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000022.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 23 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000023.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 24 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000024.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 25 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000025.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 26 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000026.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 27 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000027.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 28 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000028.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 29 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000029.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 30 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000030.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 833 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000833.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 834 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000834.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 835 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000835.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 836 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000836.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 837 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000837.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 838 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000838.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 839 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000839.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 840 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000840.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 841 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000841.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 842 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000842.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 843 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000843.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 844 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000844.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 845 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000845.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 846 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000846.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 847 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000847.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 848 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000848.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 849 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000849.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 850 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000850.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 851 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000851.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 852 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000852.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 853 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000853.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 854 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000854.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 855 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000855.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 856 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000856.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 857 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000857.out 2>&1 Can't fork: Resource temporarily unavailable No need to run meryl for OBT (OBT is disabled). No need to run meryl for OVL (genome.nmers.ovl.fasta exists). ----------------------------------------START Sun Dec 18 16:42:54 2022 /es01/home/liljn157/.conda/envs/masurca/CA8/Linux-amd64/bin/overlap_partition \ -g /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/genome.gkpStore \ -bl 10000000 \ -bs 0 \ -rs 37442910 \ -rl 0 \ -o /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper \ /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap_partition.err 2>&1 ----------------------------------------END Sun Dec 18 16:46:20 2022 (206 seconds) Created 8885 overlap jobs. Last batch '009', last job '008885'. ----------------------------------------START CONCURRENT Sun Dec 18 16:46:20 2022 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 1 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000001.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 2 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000002.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 3 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000003.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 4 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000004.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 5 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000005.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 6 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000006.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 7 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000007.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 8 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000008.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 9 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000009.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 10 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000010.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 11 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000011.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 12 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000012.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 13 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000013.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 14 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000014.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 15 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000015.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 16 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000016.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 17 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000017.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 18 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000018.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 19 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000019.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 20 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000020.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 21 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000021.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 22 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000022.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 23 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000023.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 24 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000024.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 25 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000025.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 26 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000026.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 27 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000027.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 28 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000028.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 29 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000029.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 30 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000030.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 31 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000031.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 32 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000032.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 33 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000033.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 34 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000034.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 35 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000035.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 36 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000036.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 37 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000037.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 38 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000038.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 39 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000039.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 40 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000040.out 2>&1 Can't fork: Resource temporarily unavailable sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 No need to run meryl for OBT (OBT is disabled). No need to run meryl for OVL (genome.nmers.ovl.fasta exists). ----------------------------------------START Sun Dec 18 16:46:21 2022 /es01/home/liljn157/.conda/envs/masurca/CA8/Linux-amd64/bin/overlap_partition \ -g /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/genome.gkpStore \ -bl 10000000 \ -bs 0 \ -rs 37442910 \ -rl 0 \ -o /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper \ /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap_partition.err 2>&1 ----------------------------------------END Sun Dec 18 16:49:52 2022 (211 seconds) Created 8885 overlap jobs. Last batch '009', last job '008885'. ----------------------------------------START CONCURRENT Sun Dec 18 16:49:52 2022 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 1 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000001.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 2 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000002.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 3 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000003.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 4 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000004.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 5 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000005.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 6 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000006.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 7 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000007.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 8 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000008.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 9 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000009.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 10 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000010.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 11 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000011.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 12 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000012.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 13 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000013.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 14 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000014.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 15 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000015.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 16 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000016.out 2>&1 /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/overlap.sh 17 > /es01/home/liljn157/donghai_assemble/MaSuRCA/test/CA/1-overlapper/000017.out 2>&1 Can't fork: Resource temporarily unavailable sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程 sh: fork: retry: 没有子进程

WJT0925 commented 1 year ago

sh: fork: retry: 没有子进程(No child processes)