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alekseyzimin / masurca

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ERROR: failed to merge alignments at position 554 #37

Open caixu0518 opened 6 years ago

caixu0518 commented 6 years ago

Hello MaSuRCA team, I used MaSuRCA (version: MaSuRCA-3.2.7) to de novo assemble Brassica genomes. However, I meet the following error messeage:

Running locally in 1 batch compute_psa 2044593 5215127586 Refining alignments Joining

ERROR: failed to merge alignments at position 554

   Please file a bug report

terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc xargs: nucmer: terminated by signal 6 Generating assembly input files Coverage threshold for splitting unitigs is 20 minimum ovl 250 Running assembly terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc

alekseyzimin commented 6 years ago

You likely need more RAM for this assembly.