update library dependencies

[franzebauer]

I cannot install alerce at present because it requires old libraries that conflict with various other programs I have. This absolutely needs to be fixed before public release. Ideally, this should be more flexible to versions. Or alternately provide complete docker-like environment.

[franzebauer]

for example.... ERROR: -python 7.12.0 has requirement prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0, but you'll have prompt-toolkit 1.0.18 which is incompatible. ERROR: xarray 0.15.0 has requirement pandas>=0.25, but you'll have pandas 0.24.2 which is incompatible. ERROR: specutils 1.0 has requirement astropy>=4.0, but you'll have astropy 3.2.1 which is incompatible. ERROR: gwcs 0.13.0 has requirement astropy>=4.0, but you'll have astropy 3.2.1 which is incompatible. Installing collected packages: prompt-toolkit, ipython, astropy, requests, numpydoc, pandas, alerce Attempting uninstall: prompt-toolkit Found existing installation: prompt-toolkit 3.0.5 Uninstalling prompt-toolkit-3.0.5: ERROR: Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: 'RECORD' Consider using the --user option or check the permissions.

[cvalenzu]

@franzebauer can you send your environment ( run pip freeze ) to replicate the error.

And also check the best range of verson for some packages.

[franzebauer]

alabaster==0.7.12 alembic==1.4.1 anaconda-client==1.7.2 anaconda-navigator==1.9.7 appdirs==1.4.3 appnope==0.1.0 asdf==2.6.0 asteval==0.9.18 astrometry-azel==1.2.5 astropy==4.0.1 astropy-healpix==0.5 astroquery==0.4 attrs==19.3.0 Babel==2.8.0 backcall==0.2.0 backports.functools-lru-cache==1.6.1 backports.tempfile==1.0 backports.weakref==1.0.post1 beautifulsoup4==4.9.1 bleach==3.1.5 brotlipy==0.7.0 Cartopy==0.17.0 certifi==2020.6.20 cffi==1.14.0 chardet==3.0.4 click==7.1.2 clyent==1.2.2 conda==4.8.3 conda-build==3.18.11 conda-package-handling==1.7.0 conda-verify==3.4.2 cryptography==2.9.2 cycler==0.10.0 dataset==1.2.3 decorator==4.4.2 defusedxml==0.6.0 docutils==0.16 dustmaps==1.0.4 entrypoints==0.3 extinction==0.4.2 filelock==3.0.12 fitsio==1.1.1 fs==2.4.11 future==0.18.2 glob2==0.7 gwcs==0.13.0 h5py==2.10.0 healpy==1.13.0 hips==0.2 html5lib==1.0.1 httplib2==0.17.0 idna==2.8 imageio==2.8.0 imagesize==1.2.0 imbalanced-learn==0.6.2 imblearn==0.0 importlib-metadata @ file:///opt/concourse/worker/volumes/live/84197498-cbc0-4436-7ce0-03c4490b7a28/volume/importlib-metadata_1593446431408/work ipyaladin==0.1.7 ipykernel @ file:///opt/concourse/worker/volumes/live/d654d7d0-7a76-45d4-7a77-21259603748d/volume/ipykernel_1595347267440/work/dist/ipykernel-5.3.3-py3-none-any.whl ipython==7.13.0 ipython-genutils==0.2.0 ipywidgets==7.5.1 jedi @ file:///opt/concourse/worker/volumes/live/114a62c0-dd60-4a40-6382-85abb31b5f6e/volume/jedi_1592841953086/work Jinja2==2.11.2 joblib==0.14.1 json5==0.9.2 jsonschema==3.2.0 jupyter-client @ file:///tmp/build/80754af9/jupyter_client_1594826976318/work jupyter-core==4.6.3 jupyterlab==2.0.1 jupyterlab-server @ file:///tmp/build/80754af9/jupyterlab_server_1594164409481/work keyring==21.1.1 kiwisolver==1.2.0 libarchive-c==2.9 lief==0.10.1 lmfit==1.0.1 Mako==1.1.2 MarkupSafe==1.1.1 matplotlib==3.2.0 matplotlib-venn==0.11.5 mimeparse==0.1.3 mistune==0.8.4 mkl-fft==1.1.0 mkl-random==1.1.1 mkl-service==2.3.0 mpdaf==3.4 mpmath==1.1.0 navigator-updater==0.2.1 nbconvert==5.6.1 nbformat==5.0.7 networkx==2.4 noaodatalab==2.18.6 notebook==6.0.3 numpy==1.18.5 numpydoc==0.9.2 olefile==0.46 OWSLib==0.19.1 P4J==0.27 packaging==20.4 pandas==1.0.3 pandocfilters==1.4.2 parso==0.6.2 pexpect==4.8.0 pickleshare==0.7.5 Pillow==7.0.0 pkgconfig==1.5.1 pkginfo==1.5.0.1 progressbar2==3.50.0 prometheus-client==0.8.0 prompt-toolkit==3.0.5 psutil==5.7.0 psycopg2-binary==2.8.4 ptyprocess==0.6.0 pycosat==0.6.3 pycparser @ file:///tmp/build/80754af9/pycparser_1594388511720/work pyepsg==0.4.0 pyFFTW==0.12.0 Pygments==2.6.1 pykdtree==1.3.1 pylenstool==0.1 pyOpenSSL @ file:///tmp/build/80754af9/pyopenssl_1594392929924/work pyparsing==2.4.7 pypi==2.1 pyproj==2.5.0 PyQt5==5.14.1 PyQt5-sip==12.7.1 PyQtWebEngine==5.14.0 pyrsistent==0.16.0 pyshp==2.1.0 PySocks==1.7.1 pyspeckit==0.1.23 python-dateutil==2.8.1 python-editor==1.0.4 python-utils==2.4.0 pytz==2020.1 pyvo==1.0 PyWavelets==1.1.1 PyYAML==5.3.1 pyzmq==19.0.0 qtconsole==4.7.1 QtPy==1.9.0 requests @ file:///tmp/build/80754af9/requests_1592841827918/work ruamel-yaml==0.15.87 ruamel.yaml.clib==0.2.0 scikit-image==0.16.2 scikit-learn==0.22.2.post1 scipy @ file:///opt/concourse/worker/volumes/live/14622691-c324-4e90-5a99-87aced91207b/volume/scipy_1592930535761/work semantic-version==2.8.5 Send2Trash==1.5.0 Shapely==1.7.0 simplegeneric==0.8.1 sip-tpv==1.1 six==1.15.0 sklearn==0.0 snowballstemmer==2.0.0 soupsieve==2.0 source-inspector==0.9.dev2+gbe4e85f.d20191211 specutils==1.0 Sphinx==2.4.4 sphinxcontrib-applehelp==1.0.2 sphinxcontrib-devhelp==1.0.2 sphinxcontrib-htmlhelp==1.0.3 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.3 sphinxcontrib-serializinghtml==1.1.4 SQLAlchemy==1.3.15 sympy==1.6 sysrsync==0.2.1 terminado==0.8.3 testpath==0.4.4 toml==0.10.0 tornado==6.0.4 tqdm==4.43.0 tractor===git traitlets==4.3.3 typed-ast==1.4.1 uncertainties==3.1.2 urllib3==1.25.9 venn==0.1.3 wcwidth @ file:///tmp/build/80754af9/wcwidth_1593447189090/work webencodings==0.5.1 widgetsnbextension==3.5.1 xarray==0.15.0 zipp==3.1.0 zogy==0.8

[cvalenzu]

Thanks, i'll check them out

[cvalenzu]

We simplified the requirements in the new version (1.0.1) now it should work.