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alevax / pyviper

Porting of Protein Activity and Pathway Inference to single cell and Python.
MIT License
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Remove AnnData FutureWarning #65

Closed alexanderlewis99 closed 5 months ago

alexanderlewis99 commented 5 months ago

when running on Rstudio cloud: adata_PA = pyviper.viper(gex_data=adata, # gene expression signature interactome=[lymphoid_net, myeloid_net], # list of interactomes enrichment = "area", njobs=1, verbose=True)

/cloud/lib/lib/python3.10/site-packages/anndata/_core/anndata.py:522: FutureWarning: The dtype argument is deprecated and will be removed in late 2024. warnings.warn(

alexanderlewis99 commented 5 months ago

Solved by commit ed7464d