Hi all, I realized there is an issue when input matrices contain NAs
R viper just ommits NAs when computing protein activity but pyviper returns all NA
(I know gene expression matrices don't have missing values, but exon inclusion matrices and proteomics have many). I am finishing the project using VIPER for splicing factors and as an example usage of the SF-exon networks with VIPER I am using R and python
New feature request:
Hi all, I realized there is an issue when input matrices contain NAs R viper just ommits NAs when computing protein activity but pyviper returns all NA (I know gene expression matrices don't have missing values, but exon inclusion matrices and proteomics have many). I am finishing the project using VIPER for splicing factors and as an example usage of the SF-exon networks with VIPER I am using R and python